HHsearch alignment for GI: 254780750 and conserved domain: cd03237

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.83  E-value=0.00017  Score=52.01  Aligned_cols=138  Identities=21%  Similarity=0.169  Sum_probs=67.8

Q ss_pred             EEEEEEECCCCC-CCCCEEEEEECCCCCCHHHHHHHHHHHH--------HHHHCCCCCCHHH---CCCCCCCEEEEEEEC
Q ss_conf             443456358777-7664399996778440789999999999--------9997198530353---206822105676523
Q gi|254780750|r  635 IANDCDLSCPND-KNSGKLWLLTGPNMGGKSTFLRQNALIV--------IMAQMGSYVPASY---AHIGIVDKLFSRVGS  702 (920)
Q Consensus       635 VpNdi~l~~~~~-~~~~~~~iiTGpNmgGKSt~lRqval~v--------ilAQiG~fVPA~~---a~i~~~D~IftRiGa  702 (920)
T Consensus         9 ~l~~~sL~i~~Gti~~GEiv~liGpNGaGKSTLlk~l~Gll~p~~G~I~~~g~~i~~~pq~~~~~~~~tv~~~l~~~~--   86 (246)
T cd03237           9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSIT--   86 (246)
T ss_pred             ECCEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHH--
T ss_conf             615068985688465798999997999769999999977878886079989820576874332577727999999886--


Q ss_pred             CCCCCCCCCHHHHHHHH----------------------HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             76611385328999999----------------------99999958998569993258898805679999999999997
Q gi|254780750|r  703 ADNLASGRSTFMVEMIE----------------------TASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE  760 (920)
Q Consensus       703 ~D~l~~g~STF~vEm~e----------------------~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~  760 (920)
T Consensus        87 --~~~~~~~~~~~e~~~~l~l~~~~~r~~~~LSGGqkQRv~iA~aL~~~p~ilLLDEPts~LD~~~~~~-i~~~i~~l~~  163 (246)
T cd03237          87 --KDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLM-ASKVIRRFAE  163 (246)
T ss_pred             --HHCCCCHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHH-HHHHHHHHHH
T ss_conf             --4312127999999988499567648700289859999999999841999999848987689999999-9999999998


Q ss_pred             HCCCEEEEECCCHHHHH
Q ss_conf             26984999748757976
Q gi|254780750|r  761 TNRCRGLLATHFHELTD  777 (920)
Q Consensus       761 ~~~~~~lfaTHy~eL~~  777 (920)
T Consensus       164 ~~~~Tvi~VtHDl~~a~  180 (246)
T cd03237         164 NNEKTAFVVEHDIIMID  180 (246)
T ss_pred             HCCCEEEEECCCHHHHH
T ss_conf             67989999837899999