HHsearch alignment for GI: 254780750 and conserved domain: cd03237
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.83 E-value=0.00017 Score=52.01 Aligned_cols=138 Identities=21% Similarity=0.169 Sum_probs=67.8
Q ss_pred EEEEEEECCCCC-CCCCEEEEEECCCCCCHHHHHHHHHHHH--------HHHHCCCCCCHHH---CCCCCCCEEEEEEEC
Q ss_conf 443456358777-7664399996778440789999999999--------9997198530353---206822105676523
Q gi|254780750|r 635 IANDCDLSCPND-KNSGKLWLLTGPNMGGKSTFLRQNALIV--------IMAQMGSYVPASY---AHIGIVDKLFSRVGS 702 (920)
Q Consensus 635 VpNdi~l~~~~~-~~~~~~~iiTGpNmgGKSt~lRqval~v--------ilAQiG~fVPA~~---a~i~~~D~IftRiGa 702 (920)
T Consensus 9 ~l~~~sL~i~~Gti~~GEiv~liGpNGaGKSTLlk~l~Gll~p~~G~I~~~g~~i~~~pq~~~~~~~~tv~~~l~~~~-- 86 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSIT-- 86 (246)
T ss_pred ECCEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHH--
T ss_conf 615068985688465798999997999769999999977878886079989820576874332577727999999886--
Q ss_pred CCCCCCCCCHHHHHHHH----------------------HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 76611385328999999----------------------99999958998569993258898805679999999999997
Q gi|254780750|r 703 ADNLASGRSTFMVEMIE----------------------TASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 (920)
Q Consensus 703 ~D~l~~g~STF~vEm~e----------------------~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~ 760 (920)
T Consensus 87 --~~~~~~~~~~~e~~~~l~l~~~~~r~~~~LSGGqkQRv~iA~aL~~~p~ilLLDEPts~LD~~~~~~-i~~~i~~l~~ 163 (246)
T cd03237 87 --KDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLM-ASKVIRRFAE 163 (246)
T ss_pred --HHCCCCHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHH-HHHHHHHHHH
T ss_conf --4312127999999988499567648700289859999999999841999999848987689999999-9999999998
Q ss_pred HCCCEEEEECCCHHHHH
Q ss_conf 26984999748757976
Q gi|254780750|r 761 TNRCRGLLATHFHELTD 777 (920)
Q Consensus 761 ~~~~~~lfaTHy~eL~~ 777 (920)
T Consensus 164 ~~~~Tvi~VtHDl~~a~ 180 (246)
T cd03237 164 NNEKTAFVVEHDIIMID 180 (246)
T ss_pred HCCCEEEEECCCHHHHH
T ss_conf 67989999837899999