HHsearch alignment for GI: 254780750 and conserved domain: cd03239

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.81  E-value=0.00019  Score=51.66  Aligned_cols=129  Identities=22%  Similarity=0.291  Sum_probs=67.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHH-----------HHHHCCCCC--CHHHCCCCC--CCEEE-EEEECCCC-CCCCCCHH
Q ss_conf             399996778440789999999999-----------999719853--035320682--21056-76523766-11385328
Q gi|254780750|r  651 KLWLLTGPNMGGKSTFLRQNALIV-----------IMAQMGSYV--PASYAHIGI--VDKLF-SRVGSADN-LASGRSTF  713 (920)
Q Consensus       651 ~~~iiTGpNmgGKSt~lRqval~v-----------ilAQiG~fV--PA~~a~i~~--~D~If-tRiGa~D~-l~~g~STF  713 (920)
T Consensus        23 ~~~~ivG~nGsGKSni~~ai~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~a~v~~~~~~~~~~v~qg~~~~lLSGGEks-  101 (178)
T cd03239          23 SFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQILSGGEKS-  101 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCHHH-
T ss_conf             8179989998877899999999986642765200135432443556744236799998754044124410016752589-


Q ss_pred             HHHHHHHHHHH--HHCCCCCEEEEECCCCCCCHHHHHHH--HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCEEE
Q ss_conf             99999999999--95899856999325889880567999--9999999997269849997487579766430688589
Q gi|254780750|r  714 MVEMIETASIL--NQATNQSFVILDEIGRGTATLDGLSI--AWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN  787 (920)
Q Consensus       714 ~vEm~e~~~IL--~~at~~SLVllDElGrGTst~DG~ai--A~aile~l~~~~~~~~lfaTHy~eL~~l~~~~~~v~n  787 (920)
T Consensus       102 ---l~alal~~ai~~~~p~p~~iLDEv---dAaLD~~N~~r~~~~i~el~~~-~sQfIiITH~~~~m~~ad~l~gVtm  172 (178)
T cd03239         102 ---LSALALIFALQEIKPSPFYVLDEI---DAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKKEMFENADKLIGVLF  172 (178)
T ss_pred             ---HHHHHHHHHHHCCCCCCEEEEECC---CCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHCCEEEEEEE
T ss_conf             ---999999999971389966998276---5547988999999999999738-9989999868999974785899980