HHsearch alignment for GI: 254780750 and conserved domain: cd03240

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.12  E-value=7.7e-05  Score=54.58  Aligned_cols=51  Identities=29%  Similarity=0.299  Sum_probs=34.7

Q ss_pred             CCCCCEEEEECCCCCCCHHHHHHH---HHHHHHHHHHHCCCEEEEECCCHHHHHHHH
Q ss_conf             899856999325889880567999---999999999726984999748757976643
Q gi|254780750|r  727 ATNQSFVILDEIGRGTATLDGLSI---AWATIEYLHETNRCRGLLATHFHELTDLSK  780 (920)
Q Consensus       727 at~~SLVllDElGrGTst~DG~ai---A~aile~l~~~~~~~~lfaTHy~eL~~l~~  780 (920)
T Consensus       137 ~~~p~lllLDEP---Ts~LD~~~~~~~l~~ll~~~~~~~~~tiIivtHd~e~~~~aD  190 (204)
T cd03240         137 GSNCGILALDEP---TTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAAD  190 (204)
T ss_pred             HCCCCEEEEECC---CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCC
T ss_conf             459998998187---666997899999999999998569989999944989998499