HHsearch alignment for GI: 254780750 and conserved domain: cd03240
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.12 E-value=7.7e-05 Score=54.58 Aligned_cols=51 Identities=29% Similarity=0.299 Sum_probs=34.7
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHH---HHHHHHHHHHHCCCEEEEECCCHHHHHHHH
Q ss_conf 899856999325889880567999---999999999726984999748757976643
Q gi|254780750|r 727 ATNQSFVILDEIGRGTATLDGLSI---AWATIEYLHETNRCRGLLATHFHELTDLSK 780 (920)
Q Consensus 727 at~~SLVllDElGrGTst~DG~ai---A~aile~l~~~~~~~~lfaTHy~eL~~l~~ 780 (920)
T Consensus 137 ~~~p~lllLDEP---Ts~LD~~~~~~~l~~ll~~~~~~~~~tiIivtHd~e~~~~aD 190 (204)
T cd03240 137 GSNCGILALDEP---TTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAAD 190 (204)
T ss_pred HCCCCEEEEECC---CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCC
T ss_conf 459998998187---666997899999999999998569989999944989998499