HHsearch alignment for GI: 254780750 and conserved domain: cd03246

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.76  E-value=0.00042  Score=49.08  Aligned_cols=128  Identities=23%  Similarity=0.250  Sum_probs=66.1

Q ss_pred             EEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCC------------EEEEEEE
Q ss_conf             4443456358777766439999677844078999999999999971985303532068221------------0567652
Q gi|254780750|r  634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVD------------KLFSRVG  701 (920)
Q Consensus       634 fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~~D------------~IftRiG  701 (920)
T Consensus        16 ~vL~~i~l~i----~~G~~vaIvG~sGsGKSTLl~ll~--------gl~~p~~G-~i~i~g~~~~~~~~~~~~~~i~~v~   82 (173)
T cd03246          16 PVLRNVSFSI----EPGESLAIIGPSGSGKSTLARLIL--------GLLRPTSG-RVRLDGADISQWDPNELGDHVGYLP   82 (173)
T ss_pred             CCEECEEEEE----CCCCEEEEECCCCCHHHHHHHHHH--------CCCCCCCC-EEEECCEECCCCCHHHHHCCEEEEE
T ss_conf             6454769998----599999999999980999999996--------66667999-8999999933289989842089990


Q ss_pred             CCCCCCCC------CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH--HHHHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf             37661138------5328999999999999589985699932588988056--799999999999972698499974875
Q gi|254780750|r  702 SADNLASG------RSTFMVEMIETASILNQATNQSFVILDEIGRGTATLD--GLSIAWATIEYLHETNRCRGLLATHFH  773 (920)
Q Consensus       702 a~D~l~~g------~STF~vEm~e~~~IL~~at~~SLVllDElGrGTst~D--G~aiA~aile~l~~~~~~~~lfaTHy~  773 (920)
T Consensus        83 Q~~~lf~~ti~eNiLSGGQkQRvalARal--~~~p~ililDEp---ts~LD~~~e~~i~~~l~~l~~~-~~Tvi~vtH~~  156 (173)
T cd03246          83 QDDELFSGSIAENILSGGQRQRLGLARAL--YGNPRILVLDEP---NSHLDVEGERALNQAIAALKAA-GATRIVIAHRP  156 (173)
T ss_pred             CCCEECCCCHHHHCCCHHHHHHHHHHHHH--HCCCCEEEEECC---CCCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCH
T ss_conf             88836777589976769999999999998--279999999687---6689989999999999978648-98999984799


Q ss_pred             HHHHHHH
Q ss_conf             7976643
Q gi|254780750|r  774 ELTDLSK  780 (920)
Q Consensus       774 eL~~l~~  780 (920)
T Consensus       157 ~~~~~aD  163 (173)
T cd03246         157 ETLASAD  163 (173)
T ss_pred             HHHHHCC
T ss_conf             9998499