HHsearch alignment for GI: 254780750 and conserved domain: cd03246
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.76 E-value=0.00042 Score=49.08 Aligned_cols=128 Identities=23% Similarity=0.250 Sum_probs=66.1
Q ss_pred EEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCC------------EEEEEEE
Q ss_conf 4443456358777766439999677844078999999999999971985303532068221------------0567652
Q gi|254780750|r 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVD------------KLFSRVG 701 (920)
Q Consensus 634 fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~~D------------~IftRiG 701 (920)
T Consensus 16 ~vL~~i~l~i----~~G~~vaIvG~sGsGKSTLl~ll~--------gl~~p~~G-~i~i~g~~~~~~~~~~~~~~i~~v~ 82 (173)
T cd03246 16 PVLRNVSFSI----EPGESLAIIGPSGSGKSTLARLIL--------GLLRPTSG-RVRLDGADISQWDPNELGDHVGYLP 82 (173)
T ss_pred CCEECEEEEE----CCCCEEEEECCCCCHHHHHHHHHH--------CCCCCCCC-EEEECCEECCCCCHHHHHCCEEEEE
T ss_conf 6454769998----599999999999980999999996--------66667999-8999999933289989842089990
Q ss_pred CCCCCCCC------CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH--HHHHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 37661138------5328999999999999589985699932588988056--799999999999972698499974875
Q gi|254780750|r 702 SADNLASG------RSTFMVEMIETASILNQATNQSFVILDEIGRGTATLD--GLSIAWATIEYLHETNRCRGLLATHFH 773 (920)
Q Consensus 702 a~D~l~~g------~STF~vEm~e~~~IL~~at~~SLVllDElGrGTst~D--G~aiA~aile~l~~~~~~~~lfaTHy~ 773 (920)
T Consensus 83 Q~~~lf~~ti~eNiLSGGQkQRvalARal--~~~p~ililDEp---ts~LD~~~e~~i~~~l~~l~~~-~~Tvi~vtH~~ 156 (173)
T cd03246 83 QDDELFSGSIAENILSGGQRQRLGLARAL--YGNPRILVLDEP---NSHLDVEGERALNQAIAALKAA-GATRIVIAHRP 156 (173)
T ss_pred CCCEECCCCHHHHCCCHHHHHHHHHHHHH--HCCCCEEEEECC---CCCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCH
T ss_conf 88836777589976769999999999998--279999999687---6689989999999999978648-98999984799
Q ss_pred HHHHHHH
Q ss_conf 7976643
Q gi|254780750|r 774 ELTDLSK 780 (920)
Q Consensus 774 eL~~l~~ 780 (920)
T Consensus 157 ~~~~~aD 163 (173)
T cd03246 157 ETLASAD 163 (173)
T ss_pred HHHHHCC
T ss_conf 9998499