HHsearch alignment for GI: 254780750 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.41 E-value=0.0032 Score=42.51 Aligned_cols=131 Identities=27% Similarity=0.331 Sum_probs=69.1
Q ss_pred CEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHC------------------CCCCCC
Q ss_conf 04443456358777766439999677844078999999999999971985303532------------------068221
Q gi|254780750|r 633 PFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYA------------------HIGIVD 694 (920)
Q Consensus 633 ~fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a------------------~i~~~D 694 (920)
T Consensus 27 ~~vL~~is~~i----~~Ge~vaIvG~sGsGKSTL~~ll~--------gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 94 (226)
T cd03248 27 TLVLQDVSFTL----HPGEVTALVGPSGSGKSTVVALLE--------NFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVG 94 (226)
T ss_pred CEEEECEEEEE----CCCCEEEEECCCCCHHHHHHHHHH--------CCCCCCCCEEEECCEEHHHCCHHHHHHCEEEEE
T ss_conf 94374538998----299999999999984999999996--------454678878999999934489999973269992
Q ss_pred ---EEEEEEECCCCCCCCCCHHH-HHHHHHHH-----------------------------------HHH-HCCCCCEEE
Q ss_conf ---05676523766113853289-99999999-----------------------------------999-589985699
Q gi|254780750|r 695 ---KLFSRVGSADNLASGRSTFM-VEMIETAS-----------------------------------ILN-QATNQSFVI 734 (920)
Q Consensus 695 ---~IftRiGa~D~l~~g~STF~-vEm~e~~~-----------------------------------IL~-~at~~SLVl 734 (920)
T Consensus 95 Q~~~lf~~-ti~eNi~~g~~~~~~~~i~~~~~~~~~~~~i~~l~~gl~t~i~~~g~~LSgGqkQRialARal~~~p~ili 173 (226)
T cd03248 95 QEPVLFAR-SLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLI 173 (226)
T ss_pred CCCEECCC-CHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 47957677-35666632789999999999999966146776263666406168488769999999999999975999999
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHH
Q ss_conf 9325889880567999999999999726-984999748757976643
Q gi|254780750|r 735 LDEIGRGTATLDGLSIAWATIEYLHETN-RCRGLLATHFHELTDLSK 780 (920)
Q Consensus 735 lDElGrGTst~DG~aiA~aile~l~~~~-~~~~lfaTHy~eL~~l~~ 780 (920)
T Consensus 174 lDEp---tSaLD~~t-e~~i~~~l~~~~~~~Tvi~ItH~l~~~~~~D 216 (226)
T cd03248 174 LDEA---TSALDAES-EQQVQQALYDWPERRTVLVIAHRLSTVERAD 216 (226)
T ss_pred EECC---CCCCCHHH-HHHHHHHHHHHCCCCEEEEEECCHHHHHHCC
T ss_conf 9797---66889999-9999999998669999999937999998499