HHsearch alignment for GI: 254780750 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=0.0032 Score=42.50 Aligned_cols=41 Identities=29% Similarity=0.353 Sum_probs=29.6
Q ss_pred CEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 04443456358777766439999677844078999999999999971985303
Q gi|254780750|r 633 PFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 (920)
Q Consensus 633 ~fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA 685 (920)
T Consensus 15 ~~vL~ninl~i----~~Ge~i~IvG~sGsGKSTLl~ll--------~gl~~p~ 55 (234)
T cd03251 15 PPVLRDISLDI----PAGETVALVGPSGSGKSTLVNLI--------PRFYDVD 55 (234)
T ss_pred CCCEECEEEEE----CCCCEEEEECCCCCHHHHHHHHH--------HCCCCCC
T ss_conf 67353608998----79999999989998299999999--------6676678