HHsearch alignment for GI: 254780750 and conserved domain: cd03254
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35 E-value=0.0028 Score=42.99 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=26.0
Q ss_pred EEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 44434563587777664399996778440789999999
Q gi|254780750|r 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 (920)
Q Consensus 634 fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqva 671 (920)
T Consensus 17 ~vL~~inl~i----~~Ge~vaivG~sGsGKSTLl~ll~ 50 (229)
T cd03254 17 PVLKDINFSI----KPGETVAIVGPTGAGKTTLINLLM 50 (229)
T ss_pred EEEECEEEEE----CCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 0874629998----799999999999980999999996