HHsearch alignment for GI: 254780750 and conserved domain: cd03255
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.15 E-value=3.8e-05 Score=56.88 Aligned_cols=135 Identities=19% Similarity=0.243 Sum_probs=73.2
Q ss_pred EEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH--------------------HH-----HHCCCCCCHHHC-
Q ss_conf 4434563587777664399996778440789999999999--------------------99-----971985303532-
Q gi|254780750|r 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV--------------------IM-----AQMGSYVPASYA- 688 (920)
Q Consensus 635 VpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~v--------------------il-----AQiG~fVPA~~a- 688 (920)
T Consensus 19 al~~isl~i----~~Ge~~~iiG~sGsGKTTll~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~~Ig-~v~Q~~~L 93 (218)
T cd03255 19 ALKGVSLSI----EKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIG-FVFQSFNL 93 (218)
T ss_pred EEECEEEEE----CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCEE-EECCCCCC
T ss_conf 985628998----6998999999999869999999966999996499999999887998999998650478-98667521
Q ss_pred --CCCCCCEEEEEEECCCCCCCCCCHHH--------HHHHHHH------------------HHH-HHCCCCCEEEEECCC
Q ss_conf --06822105676523766113853289--------9999999------------------999-958998569993258
Q gi|254780750|r 689 --HIGIVDKLFSRVGSADNLASGRSTFM--------VEMIETA------------------SIL-NQATNQSFVILDEIG 739 (920)
Q Consensus 689 --~i~~~D~IftRiGa~D~l~~g~STF~--------vEm~e~~------------------~IL-~~at~~SLVllDElG 739 (920)
T Consensus 94 ~~~ltV~eni~~--~~~---~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~LSGG~kQRv~iAraL~~~P~llllDEPT 168 (218)
T cd03255 94 LPDLTALENVEL--PLL---LAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPT 168 (218)
T ss_pred CCCCCHHHHHHH--HHH---HCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 556439999999--999---849998999999998767679378873887638999999999999985599999981888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHH
Q ss_conf 89880567999999999999726984999748757976643
Q gi|254780750|r 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 (920)
Q Consensus 740 rGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~~l~~ 780 (920)
T Consensus 169 s~LD~~~~~~-i~~~l~~l~~~~~~tii~itHd~~~~~~aD 208 (218)
T cd03255 169 GNLDSETGKE-VMELLRELNKEAGTTIVVVTHDPELAEYAD 208 (218)
T ss_pred CCCCHHHHHH-HHHHHHHHHHHCCCEEEEECCCHHHHHHCC
T ss_conf 7689999999-999999999962989999896889998699