HHsearch alignment for GI: 254780750 and conserved domain: cd03258
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.18 E-value=0.099 Score=31.35 Aligned_cols=138 Identities=25% Similarity=0.292 Sum_probs=67.3
Q ss_pred EEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC------CCH-HH-------CCCCCCC---EEE
Q ss_conf 443456358777766439999677844078999999999999971985------303-53-------2068221---056
Q gi|254780750|r 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY------VPA-SY-------AHIGIVD---KLF 697 (920)
Q Consensus 635 VpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~f------VPA-~~-------a~i~~~D---~If 697 (920)
T Consensus 20 al~~vsl~i----~~Ge~~~ivG~SGsGKSTllr~i~gL~-~p~sG~I~~~g~~i~~~~~~~~~~~Rr~ig~VFQ~~~L~ 94 (233)
T cd03258 20 ALKDVSLSV----PKGEIFGIIGRSGAGKSTLIRCINGLE-RPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLL 94 (233)
T ss_pred EEECCEEEE----CCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCCEEEECCEECCCCCHHHHHHHHCCCCEEECCCCCC
T ss_conf 984828899----999999998898058999999996799-999808999999989799999999862587794377889
Q ss_pred EEEECCCCCCC-----CCCH-----HHHHHHHHH---------------------HH-HHHCCCCCEEEEECCCCCCCHH
Q ss_conf 76523766113-----8532-----899999999---------------------99-9958998569993258898805
Q gi|254780750|r 698 SRVGSADNLAS-----GRST-----FMVEMIETA---------------------SI-LNQATNQSFVILDEIGRGTATL 745 (920)
Q Consensus 698 tRiGa~D~l~~-----g~ST-----F~vEm~e~~---------------------~I-L~~at~~SLVllDElGrGTst~ 745 (920)
T Consensus 95 ~~~tv~~nv~~~l~~~~~~~~~~~~r~~~lL~~vgL~~~~~~yP~eLSGGq~QRVaIARAL~~~P~lllaDEP---Ts~L 171 (233)
T cd03258 95 SSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEA---TSAL 171 (233)
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCC---CCCC
T ss_conf 9883999999999974999999999999999867991676269652677888999999998339989996597---6646
Q ss_pred HHHH--HHHHHHHHHHHHCCCEEEEECCCHHHH-HHHH
Q ss_conf 6799--999999999972698499974875797-6643
Q gi|254780750|r 746 DGLS--IAWATIEYLHETNRCRGLLATHFHELT-DLSK 780 (920)
Q Consensus 746 DG~a--iA~aile~l~~~~~~~~lfaTHy~eL~-~l~~ 780 (920)
T Consensus 172 D~~~~~~il~ll~~l~~e~g~t~i~vTHDl~~~~~~ad 209 (233)
T cd03258 172 DPETTQSILALLRDINRELGLTIVLITHEMEVVKRICD 209 (233)
T ss_pred CHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCC
T ss_conf 98899999999999999729899998989999998699