HHsearch alignment for GI: 254780750 and conserved domain: cd03270
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.98 E-value=0.00051 Score=48.49 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=36.4
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHH
Q ss_conf 995899856999325889880567999999999999726984999748757976643
Q gi|254780750|r 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 (920)
Q Consensus 724 L~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~~l~~ 780 (920)
T Consensus 152 L~~~~~~~lliLDEPTsgLD~~~~~~i~-~~i~~l~~~-G~Tvi~VsHd~~~~~~aD 206 (226)
T cd03270 152 IGSGLTGVLYVLDEPSIGLHPRDNDRLI-ETLKRLRDL-GNTVLVVEHDEDTIRAAD 206 (226)
T ss_pred HHHCCCCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHC-CCEEEEEEECHHHHHHCC
T ss_conf 9738987168832873337989999999-999999976-998999972578998489