HHsearch alignment for GI: 254780750 and conserved domain: cd03270

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.98  E-value=0.00051  Score=48.49  Aligned_cols=55  Identities=16%  Similarity=0.190  Sum_probs=36.4

Q ss_pred             HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHH
Q ss_conf             995899856999325889880567999999999999726984999748757976643
Q gi|254780750|r  724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK  780 (920)
Q Consensus       724 L~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~~l~~  780 (920)
T Consensus       152 L~~~~~~~lliLDEPTsgLD~~~~~~i~-~~i~~l~~~-G~Tvi~VsHd~~~~~~aD  206 (226)
T cd03270         152 IGSGLTGVLYVLDEPSIGLHPRDNDRLI-ETLKRLRDL-GNTVLVVEHDEDTIRAAD  206 (226)
T ss_pred             HHHCCCCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHC-CCEEEEEEECHHHHHHCC
T ss_conf             9738987168832873337989999999-999999976-998999972578998489