HHsearch alignment for GI: 254780750 and conserved domain: cd03275
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=95.42 E-value=0.23 Score=28.64 Aligned_cols=74 Identities=23% Similarity=0.380 Sum_probs=45.9
Q ss_pred CCCCCCCCHHHHHHHHHHHH--HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHC--CCEEEEECCCHHHHHHH
Q ss_conf 66113853289999999999--995899856999325889880567999999999999726--98499974875797664
Q gi|254780750|r 704 DNLASGRSTFMVEMIETASI--LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLS 779 (920)
Q Consensus 704 D~l~~g~STF~vEm~e~~~I--L~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~--~~~~lfaTHy~eL~~l~ 779 (920)
T Consensus 154 ~~LSGGEKtl----~alallFai~~~~PsPF~vLDEV---DAaLD~~Nv~-r~~~~i~~~~~~~~QfIvITh~~~~~~~A 225 (247)
T cd03275 154 DNLSGGEKTM----AALALLFAIHSYQPAPFFVLDEV---DAALDNTNVG-KVASYIREQAGPNFQFIVISLKEEFFSKA 225 (247)
T ss_pred HHCCCCHHHH----HHHHHHHHHHCCCCCCEEEEECC---CCCCCHHHHH-HHHHHHHHHHCCCCEEEEEECCHHHHHHC
T ss_conf 3338208999----99999999971289955887067---6346889999-99999998725686799998888998630
Q ss_pred HHCCCE
Q ss_conf 306885
Q gi|254780750|r 780 KSLKRF 785 (920)
Q Consensus 780 ~~~~~v 785 (920)
T Consensus 226 d~L~GV 231 (247)
T cd03275 226 DALVGV 231 (247)
T ss_pred CEEEEE
T ss_conf 018989