HHsearch alignment for GI: 254780750 and conserved domain: cd03277
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=93.81 E-value=0.069 Score=32.52 Aligned_cols=103 Identities=24% Similarity=0.431 Sum_probs=55.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH-----HH---HHCCCCCC--HHHCC--CCCCC-----------------EE--E
Q ss_conf 64399996778440789999999999-----99---97198530--35320--68221-----------------05--6
Q gi|254780750|r 649 SGKLWLLTGPNMGGKSTFLRQNALIV-----IM---AQMGSYVP--ASYAH--IGIVD-----------------KL--F 697 (920)
Q Consensus 649 ~~~~~iiTGpNmgGKSt~lRqval~v-----il---AQiG~fVP--A~~a~--i~~~D-----------------~I--f 697 (920)
T Consensus 22 gp~lN~IiGpNGSGKSsIv~AI~lgLGG~p~~lgRa~~v~~fVK~G~~~~~iEIeL~~~~~~iqvdNLcqFLPQdrV~eF 101 (213)
T cd03277 22 GPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQFLPQDRVGEF 101 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHCCCCCEEEEEEEECCCCCEEECCHHHHCCHHHHHHH
T ss_conf 99757998899887899999999881898000452656999985787642899999659997565405442762778887
Q ss_pred EEE-----------ECCCC------CCCC---CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 765-----------23766------1138---532899999999999958998569993258898805679999999999
Q gi|254780750|r 698 SRV-----------GSADN------LASG---RSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEY 757 (920)
Q Consensus 698 tRi-----------Ga~D~------l~~g---~STF~vEm~e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~ 757 (920)
T Consensus 102 a~l~p~eLLVKFRk~~~L~~L~~~~QSGGErsvst~~yll-----alQ~l~~~pFr~vDEINQgmD~~nEr~----v~~~ 172 (213)
T cd03277 102 AKLSPIELLVKFREGEQLQELDPHHQSGGERSVSTMLYLL-----SLQELTRCPFRVVDEINQGMDPTNERK----VFDM 172 (213)
T ss_pred HHCCHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHH-----HHHHHHCCCCEEEEHHHCCCCCHHHHH----HHHH
T ss_conf 7079799999998520355578778712055899999999-----997753499278534335798178999----9999
Q ss_pred HHH
Q ss_conf 997
Q gi|254780750|r 758 LHE 760 (920)
Q Consensus 758 l~~ 760 (920)
T Consensus 173 ~v~ 175 (213)
T cd03277 173 LVE 175 (213)
T ss_pred HHH
T ss_conf 999