HHsearch alignment for GI: 254780750 and conserved domain: cd03277

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=93.81  E-value=0.069  Score=32.52  Aligned_cols=103  Identities=24%  Similarity=0.431  Sum_probs=55.2

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH-----HH---HHCCCCCC--HHHCC--CCCCC-----------------EE--E
Q ss_conf             64399996778440789999999999-----99---97198530--35320--68221-----------------05--6
Q gi|254780750|r  649 SGKLWLLTGPNMGGKSTFLRQNALIV-----IM---AQMGSYVP--ASYAH--IGIVD-----------------KL--F  697 (920)
Q Consensus       649 ~~~~~iiTGpNmgGKSt~lRqval~v-----il---AQiG~fVP--A~~a~--i~~~D-----------------~I--f  697 (920)
T Consensus        22 gp~lN~IiGpNGSGKSsIv~AI~lgLGG~p~~lgRa~~v~~fVK~G~~~~~iEIeL~~~~~~iqvdNLcqFLPQdrV~eF  101 (213)
T cd03277          22 GPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQFLPQDRVGEF  101 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHCCCCCEEEEEEEECCCCCEEECCHHHHCCHHHHHHH
T ss_conf             99757998899887899999999881898000452656999985787642899999659997565405442762778887


Q ss_pred             EEE-----------ECCCC------CCCC---CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             765-----------23766------1138---532899999999999958998569993258898805679999999999
Q gi|254780750|r  698 SRV-----------GSADN------LASG---RSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEY  757 (920)
Q Consensus       698 tRi-----------Ga~D~------l~~g---~STF~vEm~e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~  757 (920)
T Consensus       102 a~l~p~eLLVKFRk~~~L~~L~~~~QSGGErsvst~~yll-----alQ~l~~~pFr~vDEINQgmD~~nEr~----v~~~  172 (213)
T cd03277         102 AKLSPIELLVKFREGEQLQELDPHHQSGGERSVSTMLYLL-----SLQELTRCPFRVVDEINQGMDPTNERK----VFDM  172 (213)
T ss_pred             HHCCHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHH-----HHHHHHCCCCEEEEHHHCCCCCHHHHH----HHHH
T ss_conf             7079799999998520355578778712055899999999-----997753499278534335798178999----9999


Q ss_pred             HHH
Q ss_conf             997
Q gi|254780750|r  758 LHE  760 (920)
Q Consensus       758 l~~  760 (920)
T Consensus       173 ~v~  175 (213)
T cd03277         173 LVE  175 (213)
T ss_pred             HHH
T ss_conf             999