HHsearch alignment for GI: 254780750 and conserved domain: cd03281
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=0 Score=500.91 Aligned_cols=203 Identities=41% Similarity=0.714 Sum_probs=186.4
Q ss_pred EECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCC
Q ss_conf 00004680588763102877044434563587777664399996778440789999999999999719853035320682
Q gi|254780750|r 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGI 692 (920)
Q Consensus 613 ~i~~gRHPviE~~l~~~~~~~fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~ 692 (920)
T Consensus 1 ~i~~~RHPlle~~~-----~~~VpNdi~l~~----~~~~~~iiTGpN~gGKSt~lkti~l~~ilaq~G~~vpa~~~~~~~ 71 (213)
T cd03281 1 EIQGGRHPLLELFV-----DSFVPNDTEIGG----GGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGL 71 (213)
T ss_pred CCCCCCCCEEECCC-----CCEECCEEEECC----CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEECCEEEEC
T ss_conf 97757586582567-----964676589779----982599998999876599999999999999858857674039972
Q ss_pred CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC--EEEEEC
Q ss_conf 210567652376611385328999999999999589985699932588988056799999999999972698--499974
Q gi|254780750|r 693 VDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC--RGLLAT 770 (920)
Q Consensus 693 ~D~IftRiGa~D~l~~g~STF~vEm~e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~--~~lfaT 770 (920)
T Consensus 72 ~~~i~~~i~~~d~~~~~~StF~~E~~~~~~il~~~~~~sLvliDEl~~GT~~~eg~ala~a~le~l~~~~~~~~~~~~tT 151 (213)
T cd03281 72 VDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVST 151 (213)
T ss_pred CCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 12237676764344413258999999999999858888658773134788835679999999999996588766499989
Q ss_pred CCHHHHHHH--HHCCCEEEEEEEEE------EECCEEEEEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 875797664--30688589999999------6099277877774478988778999998299
Q gi|254780750|r 771 HFHELTDLS--KSLKRFHNATLQVS------DSNEGIIFLHKVIPGIADHSYGIQVGKLAGL 824 (920)
Q Consensus 771 Hy~eL~~l~--~~~~~v~n~~~~~~------~~~~~i~flykl~~G~~~~Sygi~vA~laG~ 824 (920)
T Consensus 152 H~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~f~YkL~~G~~~~S~ai~vA~~~Gl 213 (213)
T cd03281 152 HFHELFNRSLLPERLKIKFLTMEVLLNPTSTSPNEDITYLYRLVPGLADTSFAIHCAKLAGI 213 (213)
T ss_pred CHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCC
T ss_conf 72787654401656443788999986364411288485987878689986099999998589