HHsearch alignment for GI: 254780750 and conserved domain: cd03282
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=0 Score=507.47 Aligned_cols=202 Identities=38% Similarity=0.647 Sum_probs=189.0
Q ss_pred EECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCC
Q ss_conf 00004680588763102877044434563587777664399996778440789999999999999719853035320682
Q gi|254780750|r 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGI 692 (920)
Q Consensus 613 ~i~~gRHPviE~~l~~~~~~~fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~ 692 (920)
T Consensus 1 iik~~rHPlle~~-----~~~~VpNdi~l~~----~~~~~~iITGpN~gGKSt~Lktigl~~ilAq~G~~vpA~~a~~~~ 71 (204)
T cd03282 1 IIRDSRHPILDRD-----KKNFIPNDIYLTR----GSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPI 71 (204)
T ss_pred CCCCCCCCEEECC-----CCCEECCEEEECC----CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEHHHCCCCC
T ss_conf 9557708638568-----8967876688669----972599998999887199999999999999968916713210336
Q ss_pred CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 21056765237661138532899999999999958998569993258898805679999999999997269849997487
Q gi|254780750|r 693 VDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF 772 (920)
Q Consensus 693 ~D~IftRiGa~D~l~~g~STF~vEm~e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy 772 (920)
T Consensus 72 ~d~I~t~i~~~d~i~~~~StF~~E~~~~~~il~~~~~~sLvliDEl~~GT~~~eg~a~a~aile~l~~~-~~~~i~tTH~ 150 (204)
T cd03282 72 FNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKK-ESTVFFATHF 150 (204)
T ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEECCH
T ss_conf 677899987666100664589999999999998588898798543348998678999999999999967-9879998976
Q ss_pred HHHHHHHHHCCCEEEEEEEEEE-ECCEEEEEEEEEECCCC-CCHHHHHHHHCCC
Q ss_conf 5797664306885899999996-09927787777447898-8778999998299
Q gi|254780750|r 773 HELTDLSKSLKRFHNATLQVSD-SNEGIIFLHKVIPGIAD-HSYGIQVGKLAGL 824 (920)
Q Consensus 773 ~eL~~l~~~~~~v~n~~~~~~~-~~~~i~flykl~~G~~~-~Sygi~vA~laG~ 824 (920)
T Consensus 151 ~~L~~l~~~~~~v~n~~m~~~~~~~~~l~f~YkL~~G~~~~~~ygi~~ar~~~l 204 (204)
T cd03282 151 RDIAAILGNKSCVVHLHMKAQSINSNGIEMAYKLVLGLYRIVDDGIRFVRVLAL 204 (204)
T ss_pred HHHHHHHHHCCCEEEEEEEEEEEECCEEEEEEEECCCCCCCCCCHHHHHHHCCC
T ss_conf 899998863888499999999973992889879752788886355999997479