HHsearch alignment for GI: 254780750 and conserved domain: cd03283
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=100.00 E-value=0 Score=465.82 Aligned_cols=197 Identities=30% Similarity=0.433 Sum_probs=184.3
Q ss_pred EECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCC
Q ss_conf 00004680588763102877044434563587777664399996778440789999999999999719853035320682
Q gi|254780750|r 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGI 692 (920)
Q Consensus 613 ~i~~gRHPviE~~l~~~~~~~fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~ 692 (920)
T Consensus 1 E~k~~rHPll~~-------~~~V~Ndi~l~------~~~~~iiTGpN~~GKSt~Lk~i~l~~ilaq~G~~vpa~~~~~~~ 67 (199)
T cd03283 1 EAKNLGHPLIGR-------EKRVANDIDME------KKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPP 67 (199)
T ss_pred CCCCCCCCCCCC-------CCCCCCCEEEC------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEHHHEEECC
T ss_conf 944368883478-------98327725767------98589998999986599999999999999968938624478233
Q ss_pred CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCC--CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 2105676523766113853289999999999995899--85699932588988056799999999999972698499974
Q gi|254780750|r 693 VDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN--QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLAT 770 (920)
Q Consensus 693 ~D~IftRiGa~D~l~~g~STF~vEm~e~~~IL~~at~--~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaT 770 (920)
T Consensus 68 -~~i~t~i~~~d~~~~~~S~F~~E~~~~~~il~~~~~~~~sLvliDEl~~GT~~~eg~a~a~a~le~l~~~-~~~~iitT 145 (199)
T cd03283 68 -VKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNK-NTIGIIST 145 (199)
T ss_pred -CEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEC
T ss_conf -0899998347512245357999999999999972489857996143247998678999999999999867-98799988
Q ss_pred CCHHHHHHHHHCCCEEEEEEEEEEECCEEEEEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 875797664306885899999996099277877774478988778999998299
Q gi|254780750|r 771 HFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGL 824 (920)
Q Consensus 771 Hy~eL~~l~~~~~~v~n~~~~~~~~~~~i~flykl~~G~~~~Sygi~vA~laG~ 824 (920)
T Consensus 146 H~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~Ykl~~G~~~~s~a~~vak~~Gl 199 (199)
T cd03283 146 HDLELADLLDLDSAVRNYHFREDIDDNKLIFDYKLKPGVSPTRNALRLMKKIGI 199 (199)
T ss_pred CCHHHHHHHCCCCCEEEEEEEEEEECCEEEEEEEECCCCCCCCHHHHHHHHCCC
T ss_conf 728988643248773899999999999871885977689987199999998589