HHsearch alignment for GI: 254780750 and conserved domain: cd03284
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=100.00 E-value=0 Score=558.59 Aligned_cols=216 Identities=58% Similarity=0.987 Sum_probs=206.7
Q ss_pred EECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCC
Q ss_conf 00004680588763102877044434563587777664399996778440789999999999999719853035320682
Q gi|254780750|r 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGI 692 (920)
Q Consensus 613 ~i~~gRHPviE~~l~~~~~~~fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~ 692 (920)
T Consensus 1 ~i~~~RHPlle~~~~---~~~~VpNdi~l~-----~~~~~~iiTGpN~sGKSt~Lk~igl~~ilaq~G~~vpA~~a~i~~ 72 (216)
T cd03284 1 EIEGGRHPVVEQVLD---NEPFVPNDTELD-----PERQILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGV 72 (216)
T ss_pred CCCCCCCCEEEEECC---CCCEECCEEEEC-----CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEECCEEEEE
T ss_conf 977586863851058---897776568978-----984599998998774599999999999999868758766159970
Q ss_pred CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 21056765237661138532899999999999958998569993258898805679999999999997269849997487
Q gi|254780750|r 693 VDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF 772 (920)
Q Consensus 693 ~D~IftRiGa~D~l~~g~STF~vEm~e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy 772 (920)
T Consensus 73 ~d~I~t~i~~~d~i~~~~StF~~e~~~~~~il~~a~~~sLvliDEl~~gT~~~eg~ala~aile~L~~~~~~~~i~tTH~ 152 (216)
T cd03284 73 VDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHY 152 (216)
T ss_pred CCEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECH
T ss_conf 44699950686213337265899999999999848776156334456899857889999999999997079728975050
Q ss_pred HHHHHHHHHCCCEEEEEEEEEEECCEEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 5797664306885899999996099277877774478988778999998299989999999999
Q gi|254780750|r 773 HELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 (920)
Q Consensus 773 ~eL~~l~~~~~~v~n~~~~~~~~~~~i~flykl~~G~~~~Sygi~vA~laG~p~~vi~~A~~~~ 836 (920)
T Consensus 153 ~~L~~l~~~~~~v~n~~~~~~~~~~~~~f~Ykl~~G~~~~s~ai~~A~~~glp~~ii~rA~eil 216 (216)
T cd03284 153 HELTELEGKLPRVKNFHVAVKEKGGGVVFLHKIVEGAADKSYGIEVARLAGLPEEVIERAREIL 216 (216)
T ss_pred HHHHHHHHHCCCCEEEEEEEEECCCEEEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 8899987628661566789997099571887976489997099999999295999999999659