HHsearch alignment for GI: 254780750 and conserved domain: cd03286
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=0 Score=528.55 Aligned_cols=211 Identities=45% Similarity=0.743 Sum_probs=197.8
Q ss_pred ECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCC
Q ss_conf 00046805887631028770444345635877776643999967784407899999999999997198530353206822
Q gi|254780750|r 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIV 693 (920)
Q Consensus 614 i~~gRHPviE~~l~~~~~~~fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~~ 693 (920)
T Consensus 2 lk~~RHPll~~~----~~~~~VpNdi~l~~----~~~~~~iiTGpN~sGKSt~lk~i~l~~ilaq~G~~vpA~~~~~~~~ 73 (218)
T cd03286 2 FEELRHPCLNAS----TASSFVPNDVDLGA----TSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLV 73 (218)
T ss_pred CCCCCCCEEECC----CCCCEECCEEEECC----CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCEEECC
T ss_conf 766758779726----89975875688679----9740899989998873899999999999998288430146477346
Q ss_pred CEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 10567652376611385328999999999999589985699932588988056799999999999972698499974875
Q gi|254780750|r 694 DKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFH 773 (920)
Q Consensus 694 D~IftRiGa~D~l~~g~STF~vEm~e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~ 773 (920)
T Consensus 74 d~i~~~i~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~GT~~~eg~ala~aile~L~~~~~~~~i~tTH~~ 153 (218)
T cd03286 74 DRIFTRIGARDDIMKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCH
T ss_conf 64899745866143115069999999999998679985010255468998116799999999999863797699976728
Q ss_pred HHHHHHHHCCCEEEEEEEEEEE------CCEEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHH
Q ss_conf 7976643068858999999960------9927787777447898877899999829998999999
Q gi|254780750|r 774 ELTDLSKSLKRFHNATLQVSDS------NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 (920)
Q Consensus 774 eL~~l~~~~~~v~n~~~~~~~~------~~~i~flykl~~G~~~~Sygi~vA~laG~p~~vi~~A 832 (920)
T Consensus 154 el~~~~~~~~~v~~~~m~~~~~~~~~~~~~~l~f~YkL~~G~~~~s~ai~iA~~~G~p~~ii~rA 218 (218)
T cd03286 154 SLCDEFHEHGGVRLGHMACAVKNESDPTIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218 (218)
T ss_pred HHHHHHHHCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHCC
T ss_conf 99998864889189889999963677878713288698879998719999999959099999229