HHsearch alignment for GI: 254780750 and conserved domain: cd03287
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=0 Score=537.19 Aligned_cols=213 Identities=47% Similarity=0.838 Sum_probs=198.5
Q ss_pred EEECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCC
Q ss_conf 40000468058876310287704443456358777766439999677844078999999999999971985303532068
Q gi|254780750|r 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIG 691 (920)
Q Consensus 612 l~i~~gRHPviE~~l~~~~~~~fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~ 691 (920)
T Consensus 1 i~ik~~RHPlle~~~----~~~~VpNdi~l~~----~~~~~~iiTGpN~~GKSt~lk~i~l~~ilaq~G~~vpa~~~~~~ 72 (222)
T cd03287 1 ILIKEGRHPMIESLL----DKSFVPNDIHLSA----EGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLS 72 (222)
T ss_pred CEEECCCCCEEECCC----CCCEECCEEEECC----CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCEEE
T ss_conf 937267486784047----9976877479768----88448999789988728999999999999972677214563996
Q ss_pred CCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 22105676523766113853289999999999995899856999325889880567999999999999726984999748
Q gi|254780750|r 692 IVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATH 771 (920)
Q Consensus 692 ~~D~IftRiGa~D~l~~g~STF~vEm~e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTH 771 (920)
T Consensus 73 ~~d~i~~~i~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvliDEl~~GT~~~eg~ala~aile~l~~~~~~~~i~tTH 152 (222)
T cd03287 73 IFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTH 152 (222)
T ss_pred CCCEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 35759995067862344522799999999999986788754423224689983577999999999998605889999476
Q ss_pred CHHHHHHHHHCC-CEEEEEEEEEE--------ECCEEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHH
Q ss_conf 757976643068-85899999996--------09927787777447898877899999829998999999
Q gi|254780750|r 772 FHELTDLSKSLK-RFHNATLQVSD--------SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 (920)
Q Consensus 772 y~eL~~l~~~~~-~v~n~~~~~~~--------~~~~i~flykl~~G~~~~Sygi~vA~laG~p~~vi~~A 832 (920)
T Consensus 153 ~~~L~~l~~~~~~~v~n~~~~~~~~~~~~~~~~~~~l~f~YkL~~G~~~~s~ai~iA~~~GlP~~ii~rA 222 (222)
T cd03287 153 YPSLGEILRRFEGSIRNYHMSYLESQKDFETSDSQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA 222 (222)
T ss_pred CHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHCC
T ss_conf 2789999875878457888889873044444668803288587779999719999999949199998029