HHsearch alignment for GI: 254780750 and conserved domain: cd03294

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54  E-value=0.025  Score=35.82  Aligned_cols=138  Identities=21%  Similarity=0.267  Sum_probs=69.5

Q ss_pred             EEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC------C---CHHH------CCCCCC---CE
Q ss_conf             4443456358777766439999677844078999999999999971985------3---0353------206822---10
Q gi|254780750|r  634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY------V---PASY------AHIGIV---DK  695 (920)
Q Consensus       634 fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~f------V---PA~~------a~i~~~---D~  695 (920)
T Consensus        38 ~aL~~vsl~i----~~GE~~~ivG~SGsGKSTLLr~i~GL~~-p~~G~I~~~G~~i~~~~~~~l~~~r~~~igmVFQ~~a  112 (269)
T cd03294          38 VGVNDVSLDV----REGEIFVIMGLSGSGKSTLLRCINRLIE-PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA  112 (269)
T ss_pred             EEECCCEEEE----CCCCEEEEECCCCCHHHHHHHHHHCCCC-CCCEEEEECCEECCCCCHHHHHHHHCCCEEEEEECCC
T ss_conf             7977747588----8999999998998489999999975999-9975999999999999989998852564699961575


Q ss_pred             EEEEEECCCCCCCC-----CCHH-----HHHHHHH---HH------------------HH-HHCCCCCEEEEECCCCCCC
Q ss_conf             56765237661138-----5328-----9999999---99------------------99-9589985699932588988
Q gi|254780750|r  696 LFSRVGSADNLASG-----RSTF-----MVEMIET---AS------------------IL-NQATNQSFVILDEIGRGTA  743 (920)
Q Consensus       696 IftRiGa~D~l~~g-----~STF-----~vEm~e~---~~------------------IL-~~at~~SLVllDElGrGTs  743 (920)
T Consensus       113 L~P~ltV~eNV~~~L~~~~~~~~e~~~rv~e~L~~vgL~~~~~~~P~qLSGGq~QRVaIARALa~~P~iLLlDEP---ts  189 (269)
T cd03294         113 LLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEA---FS  189 (269)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHHCHHHHHHHHHHHHHHCCCCEEEECCC---CC
T ss_conf             476787999986888852899789999999999867986777569678494888899999998639989997587---54


Q ss_pred             HHHH---HHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHH
Q ss_conf             0567---99999999999972698499974875797-6643
Q gi|254780750|r  744 TLDG---LSIAWATIEYLHETNRCRGLLATHFHELT-DLSK  780 (920)
Q Consensus       744 t~DG---~aiA~aile~l~~~~~~~~lfaTHy~eL~-~l~~  780 (920)
T Consensus       190 aLD~~~~~~i-~~~l~~l~~~~~~T~i~VTHD~~eA~~laD  229 (269)
T cd03294         190 ALDPLIRREM-QDELLRLQAELQKTIVFITHDLDEALRLGD  229 (269)
T ss_pred             CCCHHHHHHH-HHHHHHHHHHHCCEEEEECCCHHHHHHHCC
T ss_conf             2599999999-999999999749999999998999999799