HHsearch alignment for GI: 254780750 and conserved domain: cd03300

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.76  E-value=0.00039  Score=49.36  Aligned_cols=133  Identities=22%  Similarity=0.264  Sum_probs=73.7

Q ss_pred             EEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCC-------------------
Q ss_conf             4443456358777766439999677844078999999999999971985303532068221-------------------
Q gi|254780750|r  634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVD-------------------  694 (920)
Q Consensus       634 fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~~D-------------------  694 (920)
T Consensus        14 ~vl~~vsl~v----~~Ge~~~iiGpSGsGKSTllr~i~--------Gl~~p-~~G~I~~~g~~v~~~~~~~r~ig~VfQ~   80 (232)
T cd03300          14 VALDGVSLDI----KEGEFFTLLGPSGCGKTTLLRLIA--------GFETP-TSGEILLDGKDITNLPPHKRPVNTVFQN   80 (232)
T ss_pred             EEECCCEEEE----CCCCEEEEECCCCCHHHHHHHHHH--------CCCCC-CCEEEEECCEECCCCCHHHCCEEEEECC
T ss_conf             8987617488----799899999999983999999997--------79999-8539999999999999545775699148


Q ss_pred             -EEEEEEECCCCCCCC-----CCHH-----HHHHHHH---------------------HHHHH-HCCCCCEEEEECCCCC
Q ss_conf             -056765237661138-----5328-----9999999---------------------99999-5899856999325889
Q gi|254780750|r  695 -KLFSRVGSADNLASG-----RSTF-----MVEMIET---------------------ASILN-QATNQSFVILDEIGRG  741 (920)
Q Consensus       695 -~IftRiGa~D~l~~g-----~STF-----~vEm~e~---------------------~~IL~-~at~~SLVllDElGrG  741 (920)
T Consensus        81 ~~Lfp~ltV~~Nva~~l~~~~~~~~e~~~rv~e~l~~v~l~~~~~~~p~~LSGGqkQRVaiARAl~~~P~llllDEP~s~  160 (232)
T cd03300          81 YALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGA  160 (232)
T ss_pred             CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             85477891999987799876999999999999998758977876199666998999999999998659999998088764


Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHH
Q ss_conf             88056799999999999972698499974875797-6643
Q gi|254780750|r  742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELT-DLSK  780 (920)
Q Consensus       742 Tst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~-~l~~  780 (920)
T Consensus       161 LD~~~~~~i-~~~l~~l~~~~~~T~i~VTHd~~ea~~lad  199 (232)
T cd03300         161 LDLKLRKDM-QLELKRLQKELGITFVFVTHDQEEALTMSD  199 (232)
T ss_pred             CCHHHHHHH-HHHHHHHHHHHCCEEEEECCCHHHHHHHCC
T ss_conf             699999999-999999999859999999999999999699