HHsearch alignment for GI: 254780750 and conserved domain: cd03300
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.76 E-value=0.00039 Score=49.36 Aligned_cols=133 Identities=22% Similarity=0.264 Sum_probs=73.7
Q ss_pred EEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCC-------------------
Q ss_conf 4443456358777766439999677844078999999999999971985303532068221-------------------
Q gi|254780750|r 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVD------------------- 694 (920)
Q Consensus 634 fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~~D------------------- 694 (920)
T Consensus 14 ~vl~~vsl~v----~~Ge~~~iiGpSGsGKSTllr~i~--------Gl~~p-~~G~I~~~g~~v~~~~~~~r~ig~VfQ~ 80 (232)
T cd03300 14 VALDGVSLDI----KEGEFFTLLGPSGCGKTTLLRLIA--------GFETP-TSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred EEECCCEEEE----CCCCEEEEECCCCCHHHHHHHHHH--------CCCCC-CCEEEEECCEECCCCCHHHCCEEEEECC
T ss_conf 8987617488----799899999999983999999997--------79999-8539999999999999545775699148
Q ss_pred -EEEEEEECCCCCCCC-----CCHH-----HHHHHHH---------------------HHHHH-HCCCCCEEEEECCCCC
Q ss_conf -056765237661138-----5328-----9999999---------------------99999-5899856999325889
Q gi|254780750|r 695 -KLFSRVGSADNLASG-----RSTF-----MVEMIET---------------------ASILN-QATNQSFVILDEIGRG 741 (920)
Q Consensus 695 -~IftRiGa~D~l~~g-----~STF-----~vEm~e~---------------------~~IL~-~at~~SLVllDElGrG 741 (920)
T Consensus 81 ~~Lfp~ltV~~Nva~~l~~~~~~~~e~~~rv~e~l~~v~l~~~~~~~p~~LSGGqkQRVaiARAl~~~P~llllDEP~s~ 160 (232)
T cd03300 81 YALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160 (232)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 85477891999987799876999999999999998758977876199666998999999999998659999998088764
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHH
Q ss_conf 88056799999999999972698499974875797-6643
Q gi|254780750|r 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELT-DLSK 780 (920)
Q Consensus 742 Tst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~-~l~~ 780 (920)
T Consensus 161 LD~~~~~~i-~~~l~~l~~~~~~T~i~VTHd~~ea~~lad 199 (232)
T cd03300 161 LDLKLRKDM-QLELKRLQKELGITFVFVTHDQEEALTMSD 199 (232)
T ss_pred CCHHHHHHH-HHHHHHHHHHHCCEEEEECCCHHHHHHHCC
T ss_conf 699999999-999999999859999999999999999699