HHsearch alignment for GI: 254780750 and conserved domain: pfam00004
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=94.56 E-value=0.38 Score=27.00 Aligned_cols=103 Identities=20% Similarity=0.220 Sum_probs=49.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHC--CCC
Q ss_conf 999677844078999999999999971985303532068221056765237661138532899999999999958--998
Q gi|254780750|r 653 WLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA--TNQ 730 (920)
Q Consensus 653 ~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~~D~IftRiGa~D~l~~g~STF~vEm~e~~~IL~~a--t~~ 730 (920)
T Consensus 1 iLl~GppGtGKT~~a~~la-----~~~~~~~----~~v~~~~~~~~--------~~g~~~-----~~i~~~f~~a~~~~p 58 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVA-----KELGAPF----IEISGSELVSK--------YVGESE-----KRLRELFEAAKKLAP 58 (131)
T ss_pred CEEECCCCCCHHHHHHHHH-----HHHCCCC----EECCCCCCCCC--------CCCHHH-----HHHHHHHHHHHHCCC
T ss_conf 9878999999999999999-----9978985----33242012223--------345068-----889999999997499
Q ss_pred CEEEEECCC----CCCCHHH--HHHHHHHHHHHHHHH----CCCEEEEECCCHHHHH
Q ss_conf 569993258----8988056--799999999999972----6984999748757976
Q gi|254780750|r 731 SFVILDEIG----RGTATLD--GLSIAWATIEYLHET----NRCRGLLATHFHELTD 777 (920)
Q Consensus 731 SLVllDElG----rGTst~D--G~aiA~aile~l~~~----~~~~~lfaTHy~eL~~ 777 (920)
T Consensus 59 ~Il~iDe~d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~~I~tTN~~~~ld 115 (131)
T pfam00004 59 CVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLD 115 (131)
T ss_pred CEEEECHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCC
T ss_conf 189831167775167888887513268789999850224688769999759904499