HHsearch alignment for GI: 254780750 and conserved domain: pfam01624
>pfam01624 MutS_I MutS domain I. This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam00488, pfam05188, pfam05192 and pfam05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with globular domain I, which is involved in DNA binding, in Thermus aquaticus MutS as characterized in.
Probab=100.00 E-value=5e-38 Score=302.52 Aligned_cols=113 Identities=58% Similarity=1.004 Sum_probs=107.6
Q ss_pred CHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 91689999999877992999980882220079999999861818910788998887626561766999999999889859
Q gi|254780750|r 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRI 105 (920)
Q Consensus 26 TP~~~Qy~~iK~~~~D~il~fr~G~FYE~f~~DA~~aa~~L~i~lt~r~~~~~~~~pmaGvP~~~l~~yl~~Lv~~GykV 105 (920)
T Consensus 1 tp~~~Qy~~iK~~~~d~vvl~qvG~FYE~y~~DA~~~a~~l~i~lt~~~~~~~~~~~m~GfP~~~l~~y~~~Lv~~G~~V 80 (113)
T pfam01624 1 TPMMRQYLELKSKYPDAVLFFRVGDFYELFGEDAEIAARELGITLTVRGGGSGKRIPMAGVPEHAFETYLRRLVNKGYKV 80 (113)
T ss_pred CHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 90899999999879886999984885787886299999861818851256788875344775005999999999879979
Q ss_pred EEEEECCCHHHHHHCCCCCCEEEEEEEEECCCCEECCH
Q ss_conf 99950289788741289984554589997753030201
Q gi|254780750|r 106 AICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 (920)
Q Consensus 106 aiveQ~E~p~~~~~~~~~~~v~R~Vt~IiTpGT~~d~~ 143 (920)
T Consensus 81 ~i~eQ~e~~~~-----~~~~~~R~vt~i~TpGT~~d~e 113 (113)
T pfam01624 81 AICEQTEDPAE-----AKGVVKREVVRVITPGTLTDEE 113 (113)
T ss_pred EEEEECCCCCC-----CCCCCEEEEEEEECCCCCCCCC
T ss_conf 99996258423-----5896246588999997565889