HHsearch alignment for GI: 254780750 and conserved domain: pfam01624

>pfam01624 MutS_I MutS domain I. This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam00488, pfam05188, pfam05192 and pfam05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with globular domain I, which is involved in DNA binding, in Thermus aquaticus MutS as characterized in.
Probab=100.00  E-value=5e-38  Score=302.52  Aligned_cols=113  Identities=58%  Similarity=1.004  Sum_probs=107.6

Q ss_pred             CHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             91689999999877992999980882220079999999861818910788998887626561766999999999889859
Q gi|254780750|r   26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRI  105 (920)
Q Consensus        26 TP~~~Qy~~iK~~~~D~il~fr~G~FYE~f~~DA~~aa~~L~i~lt~r~~~~~~~~pmaGvP~~~l~~yl~~Lv~~GykV  105 (920)
T Consensus         1 tp~~~Qy~~iK~~~~d~vvl~qvG~FYE~y~~DA~~~a~~l~i~lt~~~~~~~~~~~m~GfP~~~l~~y~~~Lv~~G~~V   80 (113)
T pfam01624         1 TPMMRQYLELKSKYPDAVLFFRVGDFYELFGEDAEIAARELGITLTVRGGGSGKRIPMAGVPEHAFETYLRRLVNKGYKV   80 (113)
T ss_pred             CHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE
T ss_conf             90899999999879886999984885787886299999861818851256788875344775005999999999879979


Q ss_pred             EEEEECCCHHHHHHCCCCCCEEEEEEEEECCCCEECCH
Q ss_conf             99950289788741289984554589997753030201
Q gi|254780750|r  106 AICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ  143 (920)
Q Consensus       106 aiveQ~E~p~~~~~~~~~~~v~R~Vt~IiTpGT~~d~~  143 (920)
T Consensus        81 ~i~eQ~e~~~~-----~~~~~~R~vt~i~TpGT~~d~e  113 (113)
T pfam01624        81 AICEQTEDPAE-----AKGVVKREVVRVITPGTLTDEE  113 (113)
T ss_pred             EEEEECCCCCC-----CCCCCEEEEEEEECCCCCCCCC
T ss_conf             99996258423-----5896246588999997565889