HHsearch alignment for GI: 254780750 and conserved domain: pfam03796
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.18 E-value=0.59 Score=25.56 Aligned_cols=116 Identities=17% Similarity=0.170 Sum_probs=54.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCC---CCEEE---EEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 64399996778440789999999999999719853035320682---21056---7652376611385328999999999
Q gi|254780750|r 649 SGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGI---VDKLF---SRVGSADNLASGRSTFMVEMIETAS 722 (920)
Q Consensus 649 ~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~---~D~If---tRiGa~D~l~~g~STF~vEm~e~~~ 722 (920)
T Consensus 18 ~G~l~vi~g~pg~GKS~~~~~~a~~~a~~~-g~~Vl~~slEm~~~~~~~R~~a~~~~v~-~~~i~~~~~~-~~~~~~~~~ 94 (186)
T pfam03796 18 KGDLIIIAARPSMGKTAFALNIARNAALKQ-DKPVLFFSLEMSAEQLAERLLSSESRIS-SSKLRSGQLS-DEDWERLAE 94 (186)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHHCCC-HHHHHCCCHH-HHHHHHHHH
T ss_conf 881799996799987999999999999970-9966875475529999999999862676-5554125121-679999999
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 999589985699932588988056799999999999972698499974875
Q gi|254780750|r 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFH 773 (920)
Q Consensus 723 IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~ 773 (920)
T Consensus 95 ~~~~~~~~~l~i~~~-~-~~t~~~i----~~~i~~~~~~~~~~~vvvDyl~ 139 (186)
T pfam03796 95 AAGELSEAPLYIDDT-P-GLSLSEL----RAQARRLKREHGLGLIVIDYLQ 139 (186)
T ss_pred HHHHHHCCCEEEECC-C-CCCHHHH----HHHHHHHHHHCCCCEEEEEHHH
T ss_conf 999985398688479-9-9989999----9999999985599889974898