HHsearch alignment for GI: 254780750 and conserved domain: pfam05188

>pfam05188 MutS_II MutS domain II. This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam00488, pfam01624, pfam05192 and pfam05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. This domain corresponds to domain II in Thermus aquaticus MutS as characterized in, and has similarity resembles RNAse-H-like domains (see pfam00075).
Probab=99.78  E-value=1e-17  Score=150.88  Aligned_cols=129  Identities=28%  Similarity=0.445  Sum_probs=109.1

Q ss_pred             CEEEEEEEC-CCEEEEEEEECCCCEEEEEECC-HHHHHHHHHHCCCCEEEEECCCCCHHH-HHHHHHHCCCCEECCCCCC
Q ss_conf             369999952-9849999999786559996058-789999985229857997077689678-9988742388157185211
Q gi|254780750|r  151 NYLMAVARI-RTEWAIAWIDISTGIFKISTSN-HDRLISDIMRIDPREIIFSEKELSHAE-YKSLFETLGNVAVAQPNVF  227 (920)
Q Consensus       151 nyL~aI~~~-~~~~Gia~iDisTG~~~~~~~~-~d~l~~~L~~l~P~EIii~~~~~~~~~-~~~l~~~~~~~~~~~~~~~  227 (920)
T Consensus         1 NyL~ai~~~~~~~~glA~~DiSTGef~~~~~~~~~~l~~el~r~~P~Eiii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (133)
T pfam05188         1 NYLAAISRGDGNRYGLAFLDLSTGEFGVSEFEDFEELLAELSRLSPKELLLPESLSSSTVAESQKLLELRLRVGRRPTWL   80 (133)
T ss_pred             CEEEEEEECCCCEEEEEEEECCCCCEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEECCCCC
T ss_conf             97999998799859999999677967888528999999999825994899534422001566777640365317567532


Q ss_pred             CCHHHHHHHHHHHCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             471344788998708786421024-4434688877776436874112222221
Q gi|254780750|r  228 FDHSISESRIADYYNITTVDTFGS-FSQVEKTAAAAAISYIKKTQMVNKPTIG  279 (920)
Q Consensus       228 f~~~~~~~~l~~~~~~~~l~~~~~-~~~~~~~a~~all~Yl~~~~~~~~~~i~  279 (920)
T Consensus        81 f~~~~a~~~l~~~f~~~~l~~~g~~~~~~~i~A~galL~Yl~~Tqk~~L~hi~  133 (133)
T pfam05188        81 FELEHAYEDLNEDFGVEDLDGFGLEELPLALCAAGALISYLKETQKENLPHIQ  133 (133)
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHCC
T ss_conf             48899999999983858764468766668999999999999999671624219