HHsearch alignment for GI: 254780750 and conserved domain: pfam05729
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=95.10 E-value=0.18 Score=29.39 Aligned_cols=121 Identities=26% Similarity=0.350 Sum_probs=56.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHC------CCCCCHHHCC----CCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 39999677844078999999999999971------9853035320----6822105676523766113853289999999
Q gi|254780750|r 651 KLWLLTGPNMGGKSTFLRQNALIVIMAQM------GSYVPASYAH----IGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 (920)
Q Consensus 651 ~~~iiTGpNmgGKSt~lRqval~vilAQi------G~fVPA~~a~----i~~~D~IftRiGa~D~l~~g~STF~vEm~e~ 720 (920)
T Consensus 1 r~i~i~G~aG~GKTtll~kl~~~wa~g~~~~~~~~vf~~~~r~~~~~~~~sl~~ll~~~~~--------~~~--~~~~~~ 70 (165)
T pfam05729 1 RTVILQGEAGSGKTTLLQKLALLWAQGKLPQDFDFVFFLPCRELSRSGEASLADLLFSQWP--------EPA--APVSEV 70 (165)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCCCCCCHHHHHHHHCC--------CCC--CCHHHH
T ss_conf 9899982798989999999999998698436972899999567077766899999998767--------745--763789
Q ss_pred -HHHHHHCCCCCEEEE---ECCCCCCCHHHHHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHHHHC
Q ss_conf -999995899856999---32588988056799999999999972---698499974875797664306
Q gi|254780750|r 721 -ASILNQATNQSFVIL---DEIGRGTATLDGLSIAWATIEYLHET---NRCRGLLATHFHELTDLSKSL 782 (920)
Q Consensus 721 -~~IL~~at~~SLVll---DElGrGTst~DG~aiA~aile~l~~~---~~~~~lfaTHy~eL~~l~~~~ 782 (920)
T Consensus 71 ~~~~~~~~-~k~L~ilDGlDE~~~~~~~~~~~~~~~~~l~~ll~~~~lp~~~vliTsRp~~~~~l~~~~ 138 (165)
T pfam05729 71 WAVILELP-ERVLLILDGLDELASDLGQLDGPLPVLTLLSSLLRKKLLPGASLLLTSRPDALRDLRRGL 138 (165)
T ss_pred HHHHHHCC-CCEEEEECCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHC
T ss_conf 99998397-728999648455144435644457799999999841527886499996803798857764