HHsearch alignment for GI: 254780750 and conserved domain: pfam08298
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=90.11 E-value=0.31 Score=27.67 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=10.8
Q ss_pred CCEEEEEECCCCCCHHHHHHH
Q ss_conf 643999967784407899999
Q gi|254780750|r 649 SGKLWLLTGPNMGGKSTFLRQ 669 (920)
Q Consensus 649 ~~~~~iiTGpNmgGKSt~lRq 669 (920)
T Consensus 84 ~kqIllL~GPVGsGKSsl~e~ 104 (358)
T pfam08298 84 RKQILYLLGPVGGGKSSLAER 104 (358)
T ss_pred CEEEEEEECCCCCCHHHHHHH
T ss_conf 105899977898775899999