HHsearch alignment for GI: 254780750 and conserved domain: smart00533
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=0 Score=410.12 Aligned_cols=307 Identities=34% Similarity=0.488 Sum_probs=269.8
Q ss_pred CCHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHH
Q ss_conf 41278763012343378999986310023456789899999974022125889999975204834444567752100002
Q gi|254780750|r 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKD 390 (920)
Q Consensus 311 ~gSL~~~Ln~t~T~~G~RlLr~wL~~PL~d~~~I~~R~daVe~l~~~~~~~~~l~~~L~~i~DleRll~ri~~~~~~p~d 390 (920)
T Consensus 1 kgSL~~~ln~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~~~Ve~l~~~~~~~~~l~~~L~~i~Dlerl~~k~~~~~~~~~~ 80 (308)
T smart00533 1 KGSLFELLNHTKTPMGKRLLRRWLLQPLLDLKEINERLDAVEELVENPELRQKLRQLLKRIPDLERLLSRIERGRASPRD 80 (308)
T ss_pred CCCHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHH
T ss_conf 96668886678893899999999867179999999999999999819799999999987489889999999948998899
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHH
Q ss_conf 12068999998655675430258457787676577678999999999854310122104601016854114557998863
Q gi|254780750|r 391 IAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQ 470 (920)
Q Consensus 391 l~~L~~sl~~~~~i~~~l~~~~~~~~l~~~~~~l~~l~~~l~~~l~~~i~~~~~~~~~~~~~ik~g~d~eLD~lr~~~~~ 470 (920)
T Consensus 81 ~~~l~~~l~~~~~i~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~g~~~~Ld~l~~~~~~ 159 (308)
T smart00533 81 LLRLYDSLEGLKEIRQLLESLDG-PLLGLLLKVILEPLLELLELLLELLNDDDPLEVNDGGLIKDGFDPELDELREKLEE 159 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHCCCCCEECCCCCHHHHHHHHHHHH
T ss_conf 99999999999999999985776-24899998753113999999999873457755667783389989899999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 89999977687788738875110255862237620411433344111687652798521200011134566643346437
Q gi|254780750|r 471 SKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 (920)
Q Consensus 471 ~~~~l~~l~~~~~~~~~i~sLki~~n~~~gy~iEV~~~~~~~i~~~~~~~~~~i~~qt~~~~~Rf~t~eL~~l~~~i~~~ 550 (920)
T Consensus 160 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~i~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 233 (308)
T smart00533 160 LEEELEELLKKEREELGIDSLKLGYNKVHGYYIEVTKSEAKKVP------KDFIRRSSLKNTERFTTPELKELENELLEA 233 (308)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEEEEECHHHCCCC------CCCEEEEECCCCEEEEECHHHHHHHHHHHH
T ss_conf 99999999999999838851221636772289998630311597------301134404771799800388999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCEEECCCCCHHHHH
Q ss_conf 77776433447888765430112579888899986778877888775258851210478714000046805887
Q gi|254780750|r 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 (920)
Q Consensus 551 ~~~~~~~e~~~~~~l~~~i~~~~~~l~~~~~~ia~lD~l~SlA~~a~~~~y~rP~i~~~~~l~i~~gRHPviE~ 624 (920)
T Consensus 234 ~~~i~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~S~A~~a~~~~~~rP~i~~~~~l~i~~~RHPllE~ 307 (308)
T smart00533 234 KEEIERLEKEILRELLEKVLEYLEELRALAEALAELDVLLSLATLAAEGNYVRPEFVDSGELEIKNGRHPVLEL 307 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEEEECCCCEEEC
T ss_conf 99999999999999999999999999999999999999999999983787889577489868999786884618