RPSBLAST alignment for GI: 254780750 and conserved domain: pfam00488
>gnl|CDD|144180 pfam00488, MutS_V, MutS domain V. This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam01624, pfam05188, pfam05192 and pfam05190. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with domain V of Thermus aquaticus MutS, which contains a Walker A motif, and is structurally similar to the ATPase domain of ABC transporters. Length = 234
Score = 388 bits (998), Expect = e-108
Identities = 130/241 (53%), Positives = 171/241 (70%), Gaps = 8/241 (3%)
Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660
Y RP S ++ GRHP+VE ++ F+ ND L K ++ L+TGPNM
Sbjct: 1 YVRPEFTESDALHIEGGRHPVVE----AVLAENFVPNDVSL----GKERSRILLITGPNM 52
Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720
GGKST+LRQ ALIVIMAQ+GS+VPA A IGIVD++F+R+G++D+LASGRSTFMVEM+ET
Sbjct: 53 GGKSTYLRQVALIVIMAQIGSFVPAESARIGIVDRIFTRIGASDDLASGRSTFMVEMLET 112
Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780
A+IL+ AT++S VILDE+GRGT+T DGL+IAWA E+L E R R L ATH+HELT L++
Sbjct: 113 ANILHNATDKSLVILDELGRGTSTYDGLAIAWAVAEHLAEKIRARTLFATHYHELTKLAE 172
Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840
L N + ++N I+FL+KV PG AD SYGI V +LAGLP +V+ RA ++L E
Sbjct: 173 KLPAVKNVHMAAVETNGDIVFLYKVKPGAADKSYGIHVAELAGLPESVVERAREVLAELE 232
Query: 841 K 841
Sbjct: 233 D 233