RPSBLAST alignment for GI: 254780750 and conserved domain: TIGR01070
>gnl|CDD|162188 TIGR01070, mutS1, DNA mismatch repair protein MutS. Length = 840
Score = 678 bits (1752), Expect = 0.0
Identities = 312/874 (35%), Positives = 498/874 (56%), Gaps = 37/874 (4%)
Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85
TPMM+QY+++K+ +PD+L+F+RMGDFYELF++DA A++ L I+LT RG+ + IPM G
Sbjct: 2 TPMMQQYLKLKAEHPDALLFFRMGDFYELFYEDAKKAAQLLDISLTSRGQSADEPIPMAG 61
Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145
+P H Y++KL+K G +AICEQIE P A K V R VV+L+TPGT++++ LL
Sbjct: 62 IPYHAVEAYLEKLVKQGESVAICEQIEDPKTA-----KGPVEREVVQLITPGTVSDEALL 116
Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204
N L A+A+ + +A +D++TG FK++ ++ + L +++ R++P E++ +E +L
Sbjct: 117 PERQDNLLAAIAQESNGFGLATLDLTTGEFKVTELADKETLYAELQRLNPAEVLLAE-DL 175
Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264
S E L E + AV F + N + + TAA +
Sbjct: 176 SEMEAIELREFRKDTAVMSLEAQF--GTEDLGGLGLRN----------APLGLTAAGCLL 223
Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324
Y K+TQ P + ++Q + +D+A R NLE+ L G ++ +L +D + T
Sbjct: 224 QYAKRTQRTALPHLQPVRLYELQDFMQLDAATRRNLELTENLRGGKQNTLFSVLDETKTA 283
Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384
G RL + PL D + R D++ +++ L ++ +LK D+ R +R+ +G
Sbjct: 284 MGSRLLKRWLHRPLRDREVLEARQDTVEVLLRHFFLREGLRPLLKEVGDLERLAARVALG 343
Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444
P+D+A +R + + L L+ L+ ++ + L + L + L ++ P
Sbjct: 344 NARPRDLARLRTSLEQ-LPELRALLEELEGPTLQALAAQIDDFSE-LLELLEAALIENPP 401
Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504
RDGG +R+G D LDE R+ + +A L+ + E T I LK+ +N GY+IE
Sbjct: 402 LVVRDGGLIREGYDEELDELRAASREGTDYLARLEARERERTGIPTLKVGYNAVFGYYIE 461
Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564
VT ++ + RQT+ N R+ T EL + E+++ A L +E E FE
Sbjct: 462 VTRGQLHLVPA------HYRRRQTLKNAERYITPELKEKEDKVLEAEGKILALEKELFEE 515
Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624
L + + E+L A++ +A +D+ LA +A+ +Y RP + +++GRHP+VE+
Sbjct: 516 LRELLKKYLEALQEAARALAELDVLANLAEVAETLHYTRPRFGDDPQLRIREGRHPVVEQ 575
Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684
L+ PF+ ND +++ ++ ++ L+TGPNMGGKST++RQ ALI ++AQ+GS+VP
Sbjct: 576 VLRT----PFVPNDLEMA-----HNRRMLLITGPNMGGKSTYMRQTALIALLAQIGSFVP 626
Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744
A A + + D++F+R+G++D+LASGRSTFMVEM E A+IL+ AT S V+ DEIGRGT+T
Sbjct: 627 AESAELPLFDRIFTRIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTST 686
Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804
DGL++AWA EYLHE R + L ATH+ ELT L +SL N + + N I+FLH+
Sbjct: 687 YDGLALAWAIAEYLHEHIRAKTLFATHYFELTALEESLPGLKNVHVAALEHNGTIVFLHQ 746
Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKN 864
V+PG A SYG+ V LAGLP VI+RA IL E ++ R + S
Sbjct: 747 VLPGPASKSYGLAVAALAGLPKEVIARARQILTQLEARSTESEAPQRKAQTSAPEQISLF 806
Query: 865 NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898
+ ++ L +E++ L+ D+++PL AL LY +K
Sbjct: 807 DEAETHPL-LEELAKLDPDDLTPLQALNLLYELK 839