RPSBLAST alignment for GI: 254780750 and conserved domain: TIGR01070

>gnl|CDD|162188 TIGR01070, mutS1, DNA mismatch repair protein MutS. Length = 840
 Score =  678 bits (1752), Expect = 0.0
 Identities = 312/874 (35%), Positives = 498/874 (56%), Gaps = 37/874 (4%)

Query: 26  TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85
           TPMM+QY+++K+ +PD+L+F+RMGDFYELF++DA  A++ L I+LT RG+   + IPM G
Sbjct: 2   TPMMQQYLKLKAEHPDALLFFRMGDFYELFYEDAKKAAQLLDISLTSRGQSADEPIPMAG 61

Query: 86  VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145
           +P H    Y++KL+K G  +AICEQIE P  A     K  V R VV+L+TPGT++++ LL
Sbjct: 62  IPYHAVEAYLEKLVKQGESVAICEQIEDPKTA-----KGPVEREVVQLITPGTVSDEALL 116

Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204
                N L A+A+    + +A +D++TG FK++  ++ + L +++ R++P E++ +E +L
Sbjct: 117 PERQDNLLAAIAQESNGFGLATLDLTTGEFKVTELADKETLYAELQRLNPAEVLLAE-DL 175

Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264
           S  E   L E   + AV      F     +       N          + +  TAA   +
Sbjct: 176 SEMEAIELREFRKDTAVMSLEAQF--GTEDLGGLGLRN----------APLGLTAAGCLL 223

Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324
            Y K+TQ    P +      ++Q  + +D+A R NLE+   L G ++ +L   +D + T 
Sbjct: 224 QYAKRTQRTALPHLQPVRLYELQDFMQLDAATRRNLELTENLRGGKQNTLFSVLDETKTA 283

Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384
            G RL    +  PL D   +  R D++   +++  L   ++ +LK   D+ R  +R+ +G
Sbjct: 284 MGSRLLKRWLHRPLRDREVLEARQDTVEVLLRHFFLREGLRPLLKEVGDLERLAARVALG 343

Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444
              P+D+A +R  +   +  L   L+      L+    ++    + L + L + L ++ P
Sbjct: 344 NARPRDLARLRTSLEQ-LPELRALLEELEGPTLQALAAQIDDFSE-LLELLEAALIENPP 401

Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504
              RDGG +R+G D  LDE R+   +    +A L+ +  E T I  LK+ +N   GY+IE
Sbjct: 402 LVVRDGGLIREGYDEELDELRAASREGTDYLARLEARERERTGIPTLKVGYNAVFGYYIE 461

Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564
           VT     ++         +  RQT+ N  R+ T EL + E+++  A    L +E E FE 
Sbjct: 462 VTRGQLHLVPA------HYRRRQTLKNAERYITPELKEKEDKVLEAEGKILALEKELFEE 515

Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624
           L   + +  E+L  A++ +A +D+   LA +A+  +Y RP   +     +++GRHP+VE+
Sbjct: 516 LRELLKKYLEALQEAARALAELDVLANLAEVAETLHYTRPRFGDDPQLRIREGRHPVVEQ 575

Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684
            L+     PF+ ND +++     ++ ++ L+TGPNMGGKST++RQ ALI ++AQ+GS+VP
Sbjct: 576 VLRT----PFVPNDLEMA-----HNRRMLLITGPNMGGKSTYMRQTALIALLAQIGSFVP 626

Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744
           A  A + + D++F+R+G++D+LASGRSTFMVEM E A+IL+ AT  S V+ DEIGRGT+T
Sbjct: 627 AESAELPLFDRIFTRIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTST 686

Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804
            DGL++AWA  EYLHE  R + L ATH+ ELT L +SL    N  +   + N  I+FLH+
Sbjct: 687 YDGLALAWAIAEYLHEHIRAKTLFATHYFELTALEESLPGLKNVHVAALEHNGTIVFLHQ 746

Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKN 864
           V+PG A  SYG+ V  LAGLP  VI+RA  IL   E     ++   R        + S  
Sbjct: 747 VLPGPASKSYGLAVAALAGLPKEVIARARQILTQLEARSTESEAPQRKAQTSAPEQISLF 806

Query: 865 NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898
           + ++   L +E++  L+ D+++PL AL  LY +K
Sbjct: 807 DEAETHPL-LEELAKLDPDDLTPLQALNLLYELK 839