BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein
[Candidatus Liberibacter asiaticus str. psy62]
         (920 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 920

 Score = 1889 bits (4892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 920/920 (100%), Positives = 920/920 (100%)

Query: 1   MTKEFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDAL 60
           MTKEFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDAL
Sbjct: 1   MTKEFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDAL 60

Query: 61  LASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR 120
           LASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR
Sbjct: 61  LASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR 120

Query: 121 GNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS 180
           GNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS
Sbjct: 121 GNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS 180

Query: 181 NHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADY 240
           NHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADY
Sbjct: 181 NHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADY 240

Query: 241 YNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNL 300
           YNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNL
Sbjct: 241 YNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNL 300

Query: 301 EILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360
           EILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL
Sbjct: 301 EILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360

Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA 420
           INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA
Sbjct: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA 420

Query: 421 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480
           VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL
Sbjct: 421 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480

Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540
           KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL
Sbjct: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540

Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600
           IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN
Sbjct: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600

Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660
           YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM
Sbjct: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660

Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720
           GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET
Sbjct: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720

Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780
           ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK
Sbjct: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780

Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840
           SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE
Sbjct: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840

Query: 841 KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAW 900
           KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAW
Sbjct: 841 KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAW 900

Query: 901 TLEKYSTDEDSEPLSSKQEN 920
           TLEKYSTDEDSEPLSSKQEN
Sbjct: 901 TLEKYSTDEDSEPLSSKQEN 920


>gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate triphosphohydrolase-like protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 410

 Score = 28.1 bits (61), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYL 758
           QSF I+ E+    A  DG+++ W T+E L
Sbjct: 136 QSFRIVTELECSYADFDGINLTWETLEGL 164


>gi|254780628|ref|YP_003065041.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 395

 Score = 28.1 bits (61), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 5/29 (17%)

Query: 375 PRSLSRLKIGRG-----EPKDIAVIRDGI 398
           PRS+S +  G G     EP++IA+I DGI
Sbjct: 68  PRSISSIFFGGGTPSLIEPQNIALILDGI 96


>gi|254780539|ref|YP_003064952.1| ABC transporter, membrane spanning protein (iron) [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 273

 Score = 26.6 bits (57), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 7   SPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCL 66
           SP  +Y E I L   L  S     Q + I + +   +V+ +  DF  LFFD+    S  +
Sbjct: 113 SPSAVYVENIFLGNTLSMSRSDTIQVL-IITFSVACIVYMKWKDFVLLFFDERHAHSVGI 171

Query: 67  GITLTK 72
            + L K
Sbjct: 172 NVKLLK 177


>gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 781

 Score = 25.8 bits (55), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSA 295
           +V+K  A     Y   +  V+ P    PER  ++   F+DSA
Sbjct: 675 RVDKKYAIGGKIYSSASAAVSFPMPLVPERAGLRGAFFVDSA 716


>537021.9.peg.42_1 
          Length = 44

 Score = 25.8 bits (55), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 16/20 (80%)

Query: 115 LEAKKRGNKSLVRRNVVRLV 134
           L+ + RGNK + R+NV+R+V
Sbjct: 13  LKLRHRGNKVVRRKNVIRIV 32


>gi|254780365|ref|YP_003064778.1| UTP-glucose-1-phosphate uridylyltransferase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 299

 Score = 25.4 bits (54), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 413 LPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSK 472
           +P+E+   V++   +   +E+ L + L+D +    R  G ++D  D   +  +SLR ++K
Sbjct: 28  IPKEMLAIVDR-PVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSLRKRNK 86

Query: 473 R 473
           +
Sbjct: 87  K 87


>gi|254780968|ref|YP_003065381.1| hypothetical protein CLIBASIA_04345 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 106

 Score = 25.0 bits (53), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 350 SINFFIQNPILINPIQKILKSSPDVPR 376
           S+N  IQN I  N +   +K +P  PR
Sbjct: 4   SVNSIIQNEIKKNDVVLFMKGTPTSPR 30


>gi|254781089|ref|YP_003065502.1| hypothetical protein CLIBASIA_04955 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 80

 Score = 24.6 bits (52), Expect = 8.2,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH 844
           L +S+    +     V  GI+ + YG   GK+      ++S   DI   F  + H
Sbjct: 24  LALSNDPVSVFLKSDVFDGISKNQYGFFTGKIKVDAQFILSEKMDIPHVFLPMVH 78


>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 596

 Score = 24.3 bits (51), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 649 SGKLWLLTGPNMGGKSTFL 667
           SGK+  L GP+  GKST +
Sbjct: 378 SGKMTALVGPSGSGKSTII 396


>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 227

 Score = 24.3 bits (51), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 719 ETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT 776
           +  +I     N+  +IL +   G   L      ++ ++YL   +    L+ATH H+L 
Sbjct: 153 QRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLA 210


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.133    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 559,122
Number of Sequences: 1233
Number of extensions: 23391
Number of successful extensions: 80
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 68
Number of HSP's gapped (non-prelim): 19
length of query: 920
length of database: 328,796
effective HSP length: 82
effective length of query: 838
effective length of database: 227,690
effective search space: 190804220
effective search space used: 190804220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 43 (21.2 bits)