HHsearch alignment for GI: 254780751 and conserved domain: COG1530
>COG1530 CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=944.98 Aligned_cols=485 Identities=47% Similarity=0.717 Sum_probs=471.1
Q ss_pred CCEEEEECCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCCC
Q ss_conf 85268965289607999998998999996073346042878798997836388231353278977130222137121028
Q gi|254780751|r 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQI 81 (723)
Q Consensus 2 ~k~~lI~~~~~~e~Rvav~e~g~l~e~~~e~~~~~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~i 81 (723)
T Consensus 1 ~k~~~i~~~~-~e~rva~v~~~~l~el~ie~~~~~~~~gniy~grv~~i~p~~~aafvdig~~r~gfl~~~~~~~-~~~~ 78 (487)
T COG1530 1 MKKMLINATQ-EETRVAVVDGGALQELDIERGAKEQIVGNIYKGRVTRVLPSLEAAFVDIGLERNGFLHLSEIVP-YFRA 78 (487)
T ss_pred CCEEEEECCC-CEEEEEEEECCEEEEEEEECCCCEEEECCCEEEEECCCCCCCHHHEEECCCCCCCEEEECCCCH-HHHH
T ss_conf 9507985265-4169999968877999980477376306716888623176632220551687660688410553-4420
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98899999998886311111000000011122334443344542222334455433222234321122111211000012
Q gi|254780751|r 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVP 161 (723)
Q Consensus 82 p~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (723)
T Consensus 79 ~~~~---------------------------------------------------------------------------- 82 (487)
T COG1530 79 VLEE---------------------------------------------------------------------------- 82 (487)
T ss_pred CCCC----------------------------------------------------------------------------
T ss_conf 0023----------------------------------------------------------------------------
Q ss_pred CCCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf 23444421331068885799984033323456410123345765234422788751242046886899999999986300
Q gi|254780751|r 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEV 241 (723)
Q Consensus 162 ~~~~~~~~i~~~lk~gq~ilVQV~ke~~~~Kga~lT~~isl~Gry~Vl~P~~~~~~~iSrki~~~~~r~~l~~~~~~~~~ 241 (723)
T Consensus 83 -------~i~~~lr~~~~~~Vqv~ke~~G~Kga~lT~~Is~~grylVl~p~~~~~g~is~ri~~~~er~~Lk~~~~~l~~ 155 (487)
T COG1530 83 -------KIKVRLRGGQATLVQVVKEPRGTKGARLTTDISLAGRYLVLMPNAPDVGGISRRIEGEIERERLKEIVRELVD 155 (487)
T ss_pred -------CCEEEECCCCEEEEEEEEECCCCCCCCCEEEEEECEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHCCC
T ss_conf -------5005541786289999862576603421247860315899758987636421282887887767999860327
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCHHHHH
Q ss_conf 25871699850455757999999999999999877642014322123456458888887523766311110353203667
Q gi|254780751|r 242 PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 (723)
Q Consensus 242 ~~~~G~IiRT~a~~~~~~~l~~d~~~L~~~w~~i~~~~~~~~~p~li~~~~~~~~~~ird~~~~~~~~i~vd~~~~~~~~ 321 (723)
T Consensus 156 ~~~~g~iiRTa~~g~~~eel~~d~~~l~~~w~~i~~~~~~~~ap~ll~~e~~~v~r~~rd~~~~~~~~I~Vd~~~~~~~~ 235 (487)
T COG1530 156 PGGMGLIIRTAGEGASEEELRRDLDYLRRLWEAILERAKKRPAPGLLYEETSLVVRVIRDYVGKDITEIVVDGKEAYLEA 235 (487)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCCCCEEEECCCHHHHHH
T ss_conf 67842899640368468999999999998888998876237998699744761478752014676665998370588999
Q ss_pred HHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 88898763101211220134420356776999999984222143678649983288069998237554445551147999
Q gi|254780751|r 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 (723)
Q Consensus 322 ~~~~~~~~p~~~~~v~~~~~~~~lf~~y~ie~~i~~~~~~~V~L~sGG~lvIe~TEALt~IDVNSG~~~~~~~~e~t~l~ 401 (723)
T Consensus 236 ~~~~~~~~~~~~~~l~~~~~~~~~f~~~~ie~~i~~al~r~V~L~sGG~~vId~tEAlt~IDVnsg~~~~~~~~eeta~~ 315 (487)
T COG1530 236 KEFILEIMPELRSKLKLYRGTTPLFALFGIEEQIARALERKVQLPSGGYLVIDPTEALTVIDVNSGRFTGAGDLEETAVN 315 (487)
T ss_pred HHHHHHCCHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHEEECCCCCCEEEECCCEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 99887537122110476468873012356999999765406736889824673130138997157642366746776666
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCCHHHHHC
Q ss_conf 99999999999873103686389603347988889999999999731278728998604861489851566630112100
Q gi|254780751|r 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481 (723)
Q Consensus 402 tNleAA~EIaRQlRLRnlgGiIvIDFIdM~~~~~~~~v~~~l~~~l~~D~~~~~v~~it~lGLlEltRkR~r~sl~e~~~ 481 (723)
T Consensus 316 tNleAa~eiarqlrlR~lgGiIiIDfIdm~~~~~~~~v~~~l~~~l~~dr~r~~i~~~s~~Gl~emtR~R~~~sl~~~~~ 395 (487)
T COG1530 316 TNLEAAEEIARQLRLRNLGGIIIIDFIDMTEESHQRLVLERLRRALKRDRARIQIGRISELGLLEMTRKRTRESLLEVLS 395 (487)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEE
T ss_conf 20788999998872325577599983304125555889999999861588621124542267438998814777744566
Q ss_pred CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHC-CEEEEEECCCCCC
Q ss_conf 236754653786061146899887889997303643101357699999873023799999999848-8799984787788
Q gi|254780751|r 482 KVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG-VSINVVIGIELAD 560 (723)
Q Consensus 482 ~~c~~c~g~g~~~~~~~~~~~~~r~i~~~~~~~~~~~i~v~~~~~va~~lln~kr~~l~~lE~~~~-~~I~i~~d~~l~~ 560 (723)
T Consensus 396 ~~cp~c~G~g~v~~~~~~~~~i~R~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~e~~~~~~~i~~~~~~~~~~ 475 (487)
T COG1530 396 ERCPGCKGTGHVRSTESELLHILRYIEEEADINKTPEVGVEVPPAVAKYLLNEERGAIAELELFKGYLRVRLRVDDRVEQ 475 (487)
T ss_pred EECCCCEEEEEEECCCHHHHHHHCCCHHHHCCCCCCCCEEEECHHHHHHHCCCCCCHHHHHHHHCCCEEEEEEECHHHCC
T ss_conf 38898501589943814412332002454401467500489506665554156430256787630552489740212155
Q ss_pred CCEEEEECCCC
Q ss_conf 63389715544
Q gi|254780751|r 561 KLFYIEKGSPV 571 (723)
Q Consensus 561 ~~f~Ier~~~~ 571 (723)
T Consensus 476 ~~~~~~~~~~~ 486 (487)
T COG1530 476 EQYEVVRLREG 486 (487)
T ss_pred CCEEEEEECCC
T ss_conf 55057642147