HHsearch alignment for GI: 254780751 and conserved domain: PRK13806
>PRK13806 rpsA 30S ribosomal protein S1; Provisional.
Probab=97.84 E-value=2.9e-05 Score=55.70 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=33.4
Q ss_pred CCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCC
Q ss_conf 6042878798997836388231353278977130222137
Q gi|254780751|r 36 KQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 (723)
Q Consensus 36 ~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~ 75 (723)
T Consensus 30 ~i~~G~iV~G~Vv~I~~--d~v~VDiG~KsEG~Ip~~E~~ 67 (489)
T PRK13806 30 NVRVGDRIKAAIVAIGE--DSVFVATGSKVDGVIDRRELE 67 (489)
T ss_pred CCCCCCEEEEEEEEEEC--CEEEEEECCCEEEEEEHHHHC
T ss_conf 77799889999999979--989999689828995899925