HHsearch alignment for GI: 254780751 and conserved domain: cd05685
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea.
Probab=97.49 E-value=0.00022 Score=49.59 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=34.0
Q ss_pred CCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCC
Q ss_conf 8787989978363882313532789771302221371210
Q gi|254780751|r 40 GNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYY 79 (723)
Q Consensus 40 GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~ 79 (723)
T Consensus 1 G~iv~G~V~~i~~--fG~FV~l~~~~~GLvhisels~~~~ 38 (68)
T cd05685 1 GMVLEGVVTNVTD--FGAFVDIGVKQDGLIHISKMADRFV 38 (68)
T ss_pred CCEEEEEEEEEEC--EEEEEEECCCCEEEEECHHHCCCCC
T ss_conf 9999999999965--2899991499789998189767876