HHsearch alignment for GI: 254780751 and conserved domain: cd05686

>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis.

Probab=98.04  E-value=7.9e-06  Score=59.59  Aligned_cols=38  Identities=21%  Similarity=0.290  Sum_probs=33.3

Q ss_pred             CCCCEEEEEEEEECCCCCEEEEEE-CCCCCCCCCHHHCCCC
Q ss_conf             428787989978363882313532-7897713022213712
Q gi|254780751|r   38 IKGNIYLAKVTRVEPSLQAAFVDY-GGNRHGFLPFLEIHPD   77 (723)
Q Consensus        38 ~~GnIY~G~V~~V~p~lqAAFVdi-G~~k~gFL~~~ei~~~   77 (723)
T Consensus         2 evg~i~~G~V~~i~~f--GAFV~i~g~~~~GLvHiSeis~~   40 (73)
T cd05686           2 ALYQIFKGEVASVTEY--GAFVKIPGCRKQGLVHKSHMSSC   40 (73)
T ss_pred             CCCCEEEEEEEEEEEC--CEEEEECCCCCCEEEEEECCCCC
T ss_conf             7886999999899753--23999089884355995605412