HHsearch alignment for GI: 254780751 and conserved domain: cd05702
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=92.24 E-value=0.4 Score=26.88 Aligned_cols=34 Identities=32% Similarity=0.466 Sum_probs=31.6
Q ss_pred CCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCC
Q ss_conf 878798997836388231353278977130222137
Q gi|254780751|r 40 GNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 (723)
Q Consensus 40 GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~ 75 (723)
T Consensus 1 G~vv~g~V~sik~--~~l~V~L~d~~~GrVhiSei~ 34 (70)
T cd05702 1 GDLVKAKVKSVKP--TQLNVQLADNVHGRIHVSEVF 34 (70)
T ss_pred CCEEEEEEEEEEC--CEEEEEECCCCEEEEEHHHCC
T ss_conf 9779999999946--708999689957789845521