HHsearch alignment for GI: 254780751 and conserved domain: pfam10150
>pfam10150 RNase_E_G Ribonuclease E/G family. Ribonuclease E and Ribonuclease G are related enzymes that cleave a wide variety of RNAs.
Probab=100.00 E-value=0 Score=652.56 Aligned_cols=271 Identities=51% Similarity=0.800 Sum_probs=266.3
Q ss_pred CCCCCCEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 45765234422788751242046886899999999986300258716998504557579999999999999998776420
Q gi|254780751|r 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280 (723)
Q Consensus 201 sl~Gry~Vl~P~~~~~~~iSrki~~~~~r~~l~~~~~~~~~~~~~G~IiRT~a~~~~~~~l~~d~~~L~~~w~~i~~~~~ 280 (723)
T Consensus 1 sL~GRylVl~P~~-~~igiSrKI~d~~eR~rLk~i~~~~-~~~~~GiIiRT~A~~~~~e~l~~e~~~L~~~w~~i~~~~~ 78 (271)
T pfam10150 1 SLPGRYLVLMPNS-PGIGISRKIEDEEERKRLKEILESL-KPEGMGLIIRTAAEGASEEELAADLEYLLKLWEEILKKAK 78 (271)
T ss_pred CCCCCEEEEECCC-CCEEECCCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9886049995599-9707607889869999999999973-8898229997765689999999999999999999999984
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 14322123456458888887523766311110353203667888987631012112201344203567769999999842
Q gi|254780751|r 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 (723)
Q Consensus 281 ~~~~p~li~~~~~~~~~~ird~~~~~~~~i~vd~~~~~~~~~~~~~~~~p~~~~~v~~~~~~~~lf~~y~ie~~i~~~~~ 360 (723)
T Consensus 79 ~~~~p~ll~~~~~~~~~~lrD~~~~~~~~IivDd~~~~~~~~~~~~~~~p~~~~~v~~~~~~~~lF~~~~ie~~i~~~~~ 158 (271)
T pfam10150 79 SAKAPSLLYEELDLVLRALRDLLNPDVDEIIVDDREAYEKLKEFLKEFAPELAKKVELYEGERPLFDLYGIEEQIEKALS 158 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHCCHHHHHHHHHC
T ss_conf 59998598838858999999726533509995688999999999998681111121021478886764585999999844
Q ss_pred CCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 22143678649983288069998237554445551147999999999999998731036863896033479888899999
Q gi|254780751|r 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440 (723)
Q Consensus 361 ~~V~L~sGG~lvIe~TEALt~IDVNSG~~~~~~~~e~t~l~tNleAA~EIaRQlRLRnlgGiIvIDFIdM~~~~~~~~v~ 440 (723)
T Consensus 159 ~~V~L~sGG~lvIe~TEAlt~IDVNSG~~~~~~~~e~t~l~~NleAa~EIarQlrLRni~GiIvIDFIdm~~~~~~~~v~ 238 (271)
T pfam10150 159 RKVWLKSGGYLVIEQTEALTAIDVNSGKFTGKRNLEETALKTNLEAAKEIARQLRLRNLGGIIVIDFIDMEDEEHRRQVL 238 (271)
T ss_pred CCEEECCCCEEEEECCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 85891899779994251478985046655566777888999999999999999985688883999778889878899999
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 999997312787289986048614898515666
Q gi|254780751|r 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 (723)
Q Consensus 441 ~~l~~~l~~D~~~~~v~~it~lGLlEltRkR~r 473 (723)
T Consensus 239 ~~l~~~~~~D~~~~~i~~~T~lGL~E~tRkR~r 271 (271)
T pfam10150 239 RALKEALKRDRAKTQILGITELGLVEMTRKRTR 271 (271)
T ss_pred HHHHHHHHHCCCCCEEECCCCCEEEEEEECCCC
T ss_conf 999999850999867936788714899750469