HHsearch alignment for GI: 254780751 and conserved domain: smart00316
>smart00316 S1 Ribosomal protein S1-like RNA-binding domain.
Probab=97.81 E-value=4.1e-05 Score=54.64 Aligned_cols=70 Identities=23% Similarity=0.367 Sum_probs=58.8
Q ss_pred CCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 28787989978363882313532789771302221371210289889999999888631111100000001112233444
Q gi|254780751|r 39 KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDH 118 (723)
Q Consensus 39 ~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (723)
T Consensus 2 ~G~iv~g~V~~v~~--~g~~v~i~~~~~g~l~~~~l~~~~~--------------------------------------- 40 (72)
T smart00316 2 VGDVVEGTVTEITP--FGAFVDLGNGVEGLIPISELSDKRV--------------------------------------- 40 (72)
T ss_pred CCCEEEEEEEEEEC--CEEEEEECCCCEEEEEHHHCCCCCC---------------------------------------
T ss_conf 99899999999978--7399997699899998075055554---------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 33445422223344554332222343211221112110000122344442133106888579998403332345641012
Q gi|254780751|r 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198 (723)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~ilVQV~ke~~~~Kga~lT~ 198 (723)
T Consensus 41 -------------------------------------------------~~~~~~~~~G~~v~~~V~~~~~~~~~i~ls~ 71 (72)
T smart00316 41 -------------------------------------------------KDPEEVLKVGDEVKVKVLSVDEEKGRIILSL 71 (72)
T ss_pred -------------------------------------------------CCHHHEECCCCEEEEEEEEEECCCCEEEEEE
T ss_conf -------------------------------------------------7846836389899999999999999999985