HHsearch alignment of GI: 254780751 and MMDB domain: 1go3_E_81-187

>1go3_E (E:81-187) DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii}

Probab=97.78  E-value=5.3e-05  Score=53.43  Aligned_cols=39  Identities=23%  Similarity=0.318  Sum_probs=35.5

Q ss_pred             CCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCC
Q ss_conf             287879899783638823135327897713022213712102
Q gi|254780751|r   39 KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQ   80 (723)
Q Consensus        39 ~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~   80 (723)
                      +|.+|.|+|++|.|.  +|||+|+ +..||+|++++..+||.
T Consensus         1 VG~~~~g~V~~i~~~--G~fV~l~-g~~Glv~is~l~~~~~~   39 (107)
T 1go3_E            1 MYELIEGEVVDVVEF--GSFVRLG-PLDGLIHVSQIMDDYVS   39 (107)
T ss_dssp             TTCEEEEEEEEEETT--EEEEECS-SSEEEEEGGGSCSSCEE
T ss_pred             CCCEEEEEEEEEEEE--EEEEEEC-CCEEEEEEHHCCCCCEE
T ss_conf             898999999999732--9999955-80599981132898586