HHsearch alignment of GI: 254780751 and MMDB domain: 2b8k_G_83-215
>2b8k_G (G:83-215) B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.0011 Score=44.31 Aligned_cols=84 Identities=13% Similarity=-0.001 Sum_probs=60.7
Q ss_pred CCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 28787989978363882313532789771302221371210289889999999888631111100000001112233444
Q gi|254780751|r 39 KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDH 118 (723)
Q Consensus 39 ~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (723)
.|.+|.|+|++|.+. ++||+++ +-.||||++++..+|...+.
T Consensus 1 eG~~~~G~V~~i~~~--G~fV~l~-~~~Gli~~s~l~~~~~~d~~----------------------------------- 42 (133)
T 2b8k_G 1 KGEVVDGTVVSCSQH--GFEVQVG-PMKVFVTKHLMPQDLTFNAG----------------------------------- 42 (133)
T ss_dssp TTEEEEEEEEEEETT--EEEEECT-TSEEEEEGGGSCSSCCCBSS-----------------------------------
T ss_pred CCEEEEEEEEEECCC--EEEEEEC-CCEEEEEEEECCCCCCCCCC-----------------------------------
T ss_conf 880999999976266--4899820-71689661006775421600-----------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 33445422223344554332222343211221112110000122344442133106888579998403332345641012
Q gi|254780751|r 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198 (723)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~ilVQV~ke~~~~Kga~lT~ 198 (723)
..........+.++.||.|-|+|.+--...+-..|+.
T Consensus 43 -------------------------------------------~~~~~~~~~~~~~~~G~~v~vkVl~vd~~~~~i~ls~ 79 (133)
T 2b8k_G 43 -------------------------------------------SNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHAIG 79 (133)
T ss_dssp -------------------------------------------CSSCEEECSSCEEETTCEEEEEEEEEEEETTEEEEEE
T ss_pred -------------------------------------------CCEEEEECCCCEEECCCEEEEEEEEEECCCCEEEEEE
T ss_conf -------------------------------------------0527894388299379999999999862657048999
Q ss_pred CCCCC
Q ss_conf 33457
Q gi|254780751|r 199 YLSLA 203 (723)
Q Consensus 199 ~isl~ 203 (723)
.....
T Consensus 80 k~~~~ 84 (133)
T 2b8k_G 80 SIKED 84 (133)
T ss_dssp ECCST
T ss_pred EECCC
T ss_conf 96789