HHsearch alignment of GI: 254780751 and MMDB domain: 2ba1_A_54-145

>2ba1_A (A:54-145) Archaeal exosome RNA binding protein CSL4; RNAse PH, RNA degradation, exoribonuclease, RNA binding, S1 domain, Zn-ribbon, phosphorolytic; 2.70A {Archaeoglobus fulgidus}

Probab=96.93  E-value=0.0023  Score=42.08  Aligned_cols=40  Identities=23%  Similarity=0.470  Sum_probs=33.9

Q ss_pred             CCCCEEEEEEEEECCCCCEEEEEEC----------CCCCCCCCHHHCCCCCC
Q ss_conf             4287879899783638823135327----------89771302221371210
Q gi|254780751|r   38 IKGNIYLAKVTRVEPSLQAAFVDYG----------GNRHGFLPFLEIHPDYY   79 (723)
Q Consensus        38 ~~GnIY~G~V~~V~p~lqAAFVdiG----------~~k~gFL~~~ei~~~y~   79 (723)
                      .+|.+|.|+|++|.+-  .|||++.          .+..||+|.+++...+.
T Consensus         3 ~vG~~v~G~V~~I~~f--G~fVel~~~~~~~~~~~~~~~gli~~s~~s~~~~   52 (92)
T 2ba1_A            3 VKGDVVLGRVVDLRNS--IALIEVSSKKGENRGPSNRGIGILHVSNVDEGYV   52 (92)
T ss_dssp             CTTCEEEEEEEEEETT--EEEEEEEEETTCCSCCTTCEEEEEEHHHHCSSCC
T ss_pred             CCCCEEEEEEEEECCC--CEEEEEEECCCCCCCCCCCCCCEEEECCCCHHHH
T ss_conf             7899999999896168--3899997125863555545523068423315666