HHsearch alignment of GI: 254780751 and MMDB domain: 2bx2_L_43-126_209-218
>2bx2_L (L:43-126,L:209-218) Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=99.44 E-value=3.1e-13 Score=110.59 Aligned_cols=85 Identities=55% Similarity=0.881 Sum_probs=72.8
Q ss_pred CCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 04287879899783638823135327897713022213712102898899999998886311111000000011122334
Q gi|254780751|r 37 QIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116 (723)
Q Consensus 37 ~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (723)
+.+|+||.|+|++|.|+|.+||||||.+++||||++++.++||..+..
T Consensus 1 ~kvG~i~~G~V~~I~~f~~GaFVel~~~~~Glihis~l~~~~~~~~~~-------------------------------- 48 (94)
T 2bx2_L 1 QKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYS-------------------------------- 48 (94)
T ss_dssp CCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC------------------------------------
T ss_pred CCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEHHHCCHHHCCCCCC--------------------------------
T ss_conf 877878999995327887668995089974588858838555045533--------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 44334454222233445543322223432112211121100001223444421331068885799984033323456410
Q gi|254780751|r 117 DHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAV 196 (723)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~ilVQV~ke~~~~Kga~l 196 (723)
..+...+.+.++.||.|+|||++....+|++.|
T Consensus 49 -----------------------------------------------~~~~~~~~~~~~~Gd~V~V~V~~vd~~~~~i~l 81 (94)
T 2bx2_L 49 -----------------------------------------------AHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL 81 (94)
T ss_dssp --------------------------------------------------CCCGGGTCCTTCEEEEEEEECCCTTCCCEE
T ss_pred -----------------------------------------------CCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCC
T ss_conf -----------------------------------------------345656677357998888985145444557553
Q ss_pred CCCC
Q ss_conf 1233
Q gi|254780751|r 197 TTYL 200 (723)
Q Consensus 197 T~~i 200 (723)
|...
T Consensus 82 sl~~ 85 (94)
T 2bx2_L 82 TTFP 85 (94)
T ss_dssp ESSC
T ss_pred CCCC
T ss_conf 3459