HHsearch alignment of GI: 254780751 and MMDB domain: 2bx2_L_43-126_209-218

>2bx2_L (L:43-126,L:209-218) Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=99.44  E-value=3.1e-13  Score=110.59  Aligned_cols=85  Identities=55%  Similarity=0.881  Sum_probs=72.8

Q ss_pred             CCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             04287879899783638823135327897713022213712102898899999998886311111000000011122334
Q gi|254780751|r   37 QIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN  116 (723)
Q Consensus        37 ~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (723)
                      +.+|+||.|+|++|.|+|.+||||||.+++||||++++.++||..+..                                
T Consensus         1 ~kvG~i~~G~V~~I~~f~~GaFVel~~~~~Glihis~l~~~~~~~~~~--------------------------------   48 (94)
T 2bx2_L            1 QKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYS--------------------------------   48 (94)
T ss_dssp             CCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC------------------------------------
T ss_pred             CCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEHHHCCHHHCCCCCC--------------------------------
T ss_conf             877878999995327887668995089974588858838555045533--------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf             44334454222233445543322223432112211121100001223444421331068885799984033323456410
Q gi|254780751|r  117 DHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAV  196 (723)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~ilVQV~ke~~~~Kga~l  196 (723)
                                                                     ..+...+.+.++.||.|+|||++....+|++.|
T Consensus        49 -----------------------------------------------~~~~~~~~~~~~~Gd~V~V~V~~vd~~~~~i~l   81 (94)
T 2bx2_L           49 -----------------------------------------------AHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL   81 (94)
T ss_dssp             --------------------------------------------------CCCGGGTCCTTCEEEEEEEECCCTTCCCEE
T ss_pred             -----------------------------------------------CCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCC
T ss_conf             -----------------------------------------------345656677357998888985145444557553


Q ss_pred             CCCC
Q ss_conf             1233
Q gi|254780751|r  197 TTYL  200 (723)
Q Consensus       197 T~~i  200 (723)
                      |...
T Consensus        82 sl~~   85 (94)
T 2bx2_L           82 TTFP   85 (94)
T ss_dssp             ESSC
T ss_pred             CCCC
T ss_conf             3459