HHsearch alignment of GI: 254780751 and MMDB domain: 2khj_A_
>2khj_A (A:) 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=97.89 E-value=2.6e-05 Score=55.50 Aligned_cols=98 Identities=18% Similarity=0.142 Sum_probs=72.6
Q ss_pred EEEEEEEECCEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 07999998998999996073346042878798997836388231353278977130222137121028988999999988
Q gi|254780751|r 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKES 93 (723)
Q Consensus 14 e~Rvav~e~g~l~e~~~e~~~~~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~ 93 (723)
..|+++--...+.+. .+........|+||.|+|++|.|. ++||++|.+-.||+|.+++..+|..
T Consensus 7 ~~~~~~s~k~~~~~~-~~~~~~~~~~G~iv~g~V~~v~~~--G~~V~~~~~~~G~v~~s~l~~~~~~------------- 70 (109)
T 2khj_A 7 HHHHSSGLVPRGSHM-FNNWVALNKKGAIVTGKVTAVDAK--GATVELADGVEGYLRASEASRDRVE------------- 70 (109)
T ss_dssp --------------C-HHHHTTTCCSSSEEEEEEEEECSS--CEEEECSTTCBCCBCTTCCCSSSSS-------------
T ss_pred CCCCCCCCCCCCCCH-HHHHHHHCCCCCEEEEEEEEEECC--EEEEEECCEEEEHEEHHHHCCCCCC-------------
T ss_conf 432465731866670-999997589999999999999896--8999989818601102242445314-------------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 86311111000000011122334443344542222334455433222234321122111211000012234444213310
Q gi|254780751|r 94 NIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEV 173 (723)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 173 (723)
...+.
T Consensus 71 ---------------------------------------------------------------------------~~~~~ 75 (109)
T 2khj_A 71 ---------------------------------------------------------------------------DATLV 75 (109)
T ss_dssp ---------------------------------------------------------------------------SGGGS
T ss_pred ---------------------------------------------------------------------------CHHHH
T ss_conf ---------------------------------------------------------------------------97782
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 68885799984033323456410123345
Q gi|254780751|r 174 IKNRQILLVQIVKEERGNKGAAVTTYLSL 202 (723)
Q Consensus 174 lk~gq~ilVQV~ke~~~~Kga~lT~~isl 202 (723)
++.||.|-|.|.+-...++...||..-+.
T Consensus 76 ~~vG~~v~v~V~~vd~~~~~i~lSlk~~~ 104 (109)
T 2khj_A 76 LSVGDEVEAKFTGVDRKNRAISLSVRAKD 104 (109)
T ss_dssp CCTTCEEEEEEEEEETTTTEEEEETTSSS
T ss_pred EECCCEEEEEEEEEECCCCEEEEEEEECC
T ss_conf 03242799999999899999999834455