HHsearch alignment of GI: 254780751 and MMDB domain: 2nn6_I_76-169

>2nn6_I (I:76-169) 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens}
Probab=97.58  E-value=0.00016  Score=50.07  Aligned_cols=76  Identities=16%  Similarity=0.115  Sum_probs=58.3

Q ss_pred             CCCCCEEEEEEEEECCCCCEEEEEECC--------CCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             042878798997836388231353278--------977130222137121028988999999988863111110000000
Q gi|254780751|r   37 QIKGNIYLAKVTRVEPSLQAAFVDYGG--------NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVT  108 (723)
Q Consensus        37 ~~~GnIY~G~V~~V~p~lqAAFVdiG~--------~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~~~~~~~~~~  108 (723)
                      ..+|.|+.|+|++|.+  ..|||+|+.        +-.||+|.+|+.++|..                            
T Consensus         4 pkvG~iv~G~V~~v~~--~G~fV~i~~~~~~~l~~~i~Gli~~seis~~~v~----------------------------   53 (94)
T 2nn6_I            4 PDVGAIVTCKVSSINS--RFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKD----------------------------   53 (94)
T ss_dssp             CCTTCEEEEEEEEECS--SEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSC----------------------------
T ss_pred             CCCCCEEEEEEEEECC--CCEEEEEEEECCCCCCCCCCCCCCHHHCCCCCCC----------------------------
T ss_conf             8889989999989917--9889999776480157662133327520103254----------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCC
Q ss_conf             11122334443344542222334455433222234321122111211000012234444213310688857999840333
Q gi|254780751|r  109 HGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE  188 (723)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~ilVQV~ke~  188 (723)
                                                                                ...+.+.++.||.|-++|+.--
T Consensus        54 ----------------------------------------------------------~~~~~~~~~~Gd~V~~kV~~vd   75 (94)
T 2nn6_I           54 ----------------------------------------------------------KVEIYKSFRPGDIVLAKVISLG   75 (94)
T ss_dssp             ----------------------------------------------------------CCCGGGTCCSSSEEEEEEEEEE
T ss_pred             ----------------------------------------------------------CCCHHHHCCCCCEEEEEEEEEC
T ss_conf             ----------------------------------------------------------3066863679999999999863


Q ss_pred             CCCCCCCCCCCC
Q ss_conf             234564101233
Q gi|254780751|r  189 RGNKGAAVTTYL  200 (723)
Q Consensus       189 ~~~Kga~lT~~i  200 (723)
                      ...+-..||+.-
T Consensus        76 ~~~~~i~LS~k~   87 (94)
T 2nn6_I           76 DAQSNYLLTTAE   87 (94)
T ss_dssp             TTTTEEEEECCS
T ss_pred             CCCCEEEEEECC
T ss_conf             889739989628