HHsearch alignment of GI: 254780751 and MMDB domain: 2nn6_I_76-169
>2nn6_I (I:76-169) 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens}
Probab=97.58 E-value=0.00016 Score=50.07 Aligned_cols=76 Identities=16% Similarity=0.115 Sum_probs=58.3
Q ss_pred CCCCCEEEEEEEEECCCCCEEEEEECC--------CCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 042878798997836388231353278--------977130222137121028988999999988863111110000000
Q gi|254780751|r 37 QIKGNIYLAKVTRVEPSLQAAFVDYGG--------NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVT 108 (723)
Q Consensus 37 ~~~GnIY~G~V~~V~p~lqAAFVdiG~--------~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~~~~~~~~~~ 108 (723)
..+|.|+.|+|++|.+ ..|||+|+. +-.||+|.+|+.++|..
T Consensus 4 pkvG~iv~G~V~~v~~--~G~fV~i~~~~~~~l~~~i~Gli~~seis~~~v~---------------------------- 53 (94)
T 2nn6_I 4 PDVGAIVTCKVSSINS--RFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKD---------------------------- 53 (94)
T ss_dssp CCTTCEEEEEEEEECS--SEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSC----------------------------
T ss_pred CCCCCEEEEEEEEECC--CCEEEEEEEECCCCCCCCCCCCCCHHHCCCCCCC----------------------------
T ss_conf 8889989999989917--9889999776480157662133327520103254----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCC
Q ss_conf 11122334443344542222334455433222234321122111211000012234444213310688857999840333
Q gi|254780751|r 109 HGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188 (723)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~ilVQV~ke~ 188 (723)
...+.+.++.||.|-++|+.--
T Consensus 54 ----------------------------------------------------------~~~~~~~~~~Gd~V~~kV~~vd 75 (94)
T 2nn6_I 54 ----------------------------------------------------------KVEIYKSFRPGDIVLAKVISLG 75 (94)
T ss_dssp ----------------------------------------------------------CCCGGGTCCSSSEEEEEEEEEE
T ss_pred ----------------------------------------------------------CCCHHHHCCCCCEEEEEEEEEC
T ss_conf ----------------------------------------------------------3066863679999999999863
Q ss_pred CCCCCCCCCCCC
Q ss_conf 234564101233
Q gi|254780751|r 189 RGNKGAAVTTYL 200 (723)
Q Consensus 189 ~~~Kga~lT~~i 200 (723)
...+-..||+.-
T Consensus 76 ~~~~~i~LS~k~ 87 (94)
T 2nn6_I 76 DAQSNYLLTTAE 87 (94)
T ss_dssp TTTTEEEEECCS
T ss_pred CCCCEEEEEECC
T ss_conf 889739989628