HHsearch alignment of GI: 254780751 and MMDB domain: 2waq_E_81-180

>2waq_E (E:81-180) DNA-directed RNA polymerase RPO7 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_E 2pmz_E 3hkz_E

Probab=97.33  E-value=0.00032  Score=47.98  Aligned_cols=39  Identities=21%  Similarity=0.342  Sum_probs=35.6

Q ss_pred             CCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCC
Q ss_conf             287879899783638823135327897713022213712102
Q gi|254780751|r   39 KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQ   80 (723)
Q Consensus        39 ~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~   80 (723)
                      +|.+|.|+|++|.|.  ++||+++ +..||+|.+++..+||.
T Consensus         1 VG~~~~g~V~~v~~~--G~fV~l~-~~~Glv~~s~ls~~~~~   39 (100)
T 2waq_E            1 VQEVVEGEVLQVDNY--GIFVNLG-PMDGLVHISQITDDTLK   39 (100)
T ss_dssp             SSCCCCEEEEEECSS--EEEEBCS-SSBBCEESTTBCSSSSC
T ss_pred             CCCEEEEEEEEEECC--EEEEEEC-CCCCEEEEHHHCCCCCC
T ss_conf             782999999998547--1999714-87753975232787420