HHsearch alignment of GI: 254780751 and MMDB domain: 3bzc_A_642-785
>3bzc_A (A:642-785) TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa}
Probab=97.46 E-value=5.6e-05 Score=53.26 Aligned_cols=87 Identities=21% Similarity=0.233 Sum_probs=68.8
Q ss_pred CCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 46042878798997836388231353278977130222137121028988999999988863111110000000111223
Q gi|254780751|r 35 KKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTI 114 (723)
Q Consensus 35 ~~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (723)
....+|.||.|+|++|.|. +|||++|.+-.||+|.+|+..+|..
T Consensus 9 ~~~~~G~iv~G~V~~v~~~--G~fV~l~~~i~Glv~~sels~~~~~---------------------------------- 52 (144)
T 3bzc_A 9 KDLKPGMVLEGVVTNVTNF--GAFVDIGVHQDGLVHISALSEKFVK---------------------------------- 52 (144)
T ss_dssp TTCCTTCBCCCEEEEEETT--EEEEECSSSSEEEEETTTSCSSCCS----------------------------------
T ss_pred HCCCCCCEEEEEEEEECCC--CEEEEECCCCCEEEEHHHCCCCCCC----------------------------------
T ss_conf 3089998899999987578--5699806997216778854777789----------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCC
Q ss_conf 34443344542222334455433222234321122111211000012234444213310688857999840333234564
Q gi|254780751|r 115 PNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGA 194 (723)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~ilVQV~ke~~~~Kga 194 (723)
...+.++.||.|-|.|++--..+.-.
T Consensus 53 ------------------------------------------------------~~~~~~~~G~~v~vkV~~vd~~~~~i 78 (144)
T 3bzc_A 53 ------------------------------------------------------DPYEVVKAGDIVKVKVMEVDIPRNRV 78 (144)
T ss_dssp ------------------------------------------------------CHHHHCCTTCCCCCBEEEEETTTTEE
T ss_pred ------------------------------------------------------CHHHCCCCCCEEEEEEEEEECCCCEE
T ss_conf ------------------------------------------------------98884999998999999986467889
Q ss_pred CCCCCCCCCCCCEEECC
Q ss_conf 10123345765234422
Q gi|254780751|r 195 AVTTYLSLAGRYSVLMP 211 (723)
Q Consensus 195 ~lT~~isl~Gry~Vl~P 211 (723)
.||..-+.........+
T Consensus 79 ~LS~~~~~~~~~~~~~~ 95 (144)
T 3bzc_A 79 GLSMRMSDTPGEKVEGQ 95 (144)
T ss_dssp EECCSSCCCCC------
T ss_pred EEEECCCCCCCCCCCCC
T ss_conf 98842666666666677