HHsearch alignment of GI: 254780751 and MMDB domain: 3cdi_A_151-239_464-723
>3cdi_A (A:151-239,A:464-723) Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=97.45 E-value=2.1e-05 Score=56.18 Aligned_cols=42 Identities=31% Similarity=0.498 Sum_probs=32.1
Q ss_pred CCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCC
Q ss_conf 60428787989978363882313532789771302221371210
Q gi|254780751|r 36 KQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYY 79 (723)
Q Consensus 36 ~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~ 79 (723)
...+|.||.|+|++|.| ..|||+++.+..||||.+++..+++
T Consensus 250 ~~~vG~i~~g~V~~I~~--fGaFV~l~~g~~GlihiSel~~~rv 291 (349)
T 3cdi_A 250 EIEVGRVYTGKVTRIVD--FGAFVAIGGGKEGLVHISQIADKRV 291 (349)
T ss_dssp --------------------------------------------
T ss_pred CCCCCCEEEEEEEEEEE--EEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 77669889999999994--3299996699944787020467565