HHsearch alignment of GI: 254780751 and MMDB domain: 3cw2_C_1-85
>3cw2_C (C:1-85) Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B
Probab=97.75 E-value=8.8e-05 Score=51.88 Aligned_cols=75 Identities=23% Similarity=0.454 Sum_probs=61.0
Q ss_pred CCCCCCCCEEEEEEEEECCCCCEEEEEECC--CCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 346042878798997836388231353278--977130222137121028988999999988863111110000000111
Q gi|254780751|r 34 HKKQIKGNIYLAKVTRVEPSLQAAFVDYGG--NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 (723)
Q Consensus 34 ~~~~~~GnIY~G~V~~V~p~lqAAFVdiG~--~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~~~~~~~~~~~~~ 111 (723)
-.....|+||.|+|++|.+. +|||++|. +-.||+|.+|+.++|+.
T Consensus 6 ~~~~~~G~~v~g~V~~i~~~--G~~V~l~~~~~i~G~i~~s~ls~~~~~------------------------------- 52 (85)
T 3cw2_C 6 SKLPSEGEILIATVKQVFDY--GSYVSLDEYGGLQAFLPWSEVSSKWVK------------------------------- 52 (85)
T ss_dssp SSSCCTTCEEEEEEEECCSS--SBEEEETTTTSEECBBCGGGSSCSSCC-------------------------------
T ss_pred CCCCCCCCEEEEEEEEEECC--EEEEEECCCCCCEEEEEHHHCCCCCCC-------------------------------
T ss_conf 78989999999999999755--489997567990899898995886558-------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCC
Q ss_conf 22334443344542222334455433222234321122111211000012234444213310688857999840333234
Q gi|254780751|r 112 VTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGN 191 (723)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~ilVQV~ke~~~~ 191 (723)
...+.++.||.|-|.|.+--..+
T Consensus 53 ---------------------------------------------------------~~~~~~~vG~~V~v~V~~vd~~~ 75 (85)
T 3cw2_C 53 ---------------------------------------------------------NIRDVLKENRKVIVKVIRVDRRK 75 (85)
T ss_dssp ---------------------------------------------------------CHHHHSCTTCEEEEEECCCCSSS
T ss_pred ---------------------------------------------------------CHHHHCCCCCEEEEEEEEEECCC
T ss_conf ---------------------------------------------------------98881889999999996652557
Q ss_pred CCCCCCC
Q ss_conf 5641012
Q gi|254780751|r 192 KGAAVTT 198 (723)
Q Consensus 192 Kga~lT~ 198 (723)
+...||.
T Consensus 76 ~ri~LS~ 82 (85)
T 3cw2_C 76 GTVDVSL 82 (85)
T ss_dssp CCCBEES
T ss_pred CCEEEEE
T ss_conf 4437898