Query         gi|254780751|ref|YP_003065164.1| ribonuclease E [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 723
No_of_seqs    290 out of 2083
Neff          6.5 
Searched_HMMs 33803
Date          Wed Jun  1 14:31:24 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780751.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2bx2_L Ribonuclease E, RNAse  100.0       0       0  401.2  14.4  138  346-487     1-138 (138)
  2 >2bx2_L Ribonuclease E, RNAse   99.8 1.8E-18 5.3E-23  147.0   9.1   96  484-579     1-97  (107)
  3 >2bx2_L Ribonuclease E, RNAse   99.7 1.1E-17 3.1E-22  141.7   6.6   81  200-281     1-81  (82)
  4 >2bx2_L Ribonuclease E, RNAse   99.5 3.3E-13 9.7E-18  110.4   8.8   53  293-345    43-96  (96)
  5 >2bx2_L Ribonuclease E, RNAse   99.4 3.1E-13 9.2E-18  110.6   7.7   85   37-200     1-85  (94)
  6 >2khi_A 30S ribosomal protein   98.2 4.6E-06 1.4E-10   60.8   6.8   96   20-204    11-106 (115)
  7 >1wi5_A RRP5 protein homolog;   98.1 9.7E-06 2.9E-10   58.5   6.5   93   35-216    17-110 (119)
  8 >2je6_I RRP4, exosome complex   98.1 7.8E-06 2.3E-10   59.2   5.8   40   38-79      3-42  (85)
  9 >2z0s_A Probable exosome compl  98.0 1.4E-05 4.1E-10   57.4   6.2   45   33-79     60-104 (147)
 10 >2ba0_A Archeal exosome RNA bi  98.0 2.2E-05 6.6E-10   56.0   7.0   40   38-79      3-42  (82)
 11 >2k4k_A GSP13, general stress   98.0 2.2E-05 6.6E-10   56.0   6.8  100   36-226     4-105 (130)
 12 >2nn6_H Exosome complex exonuc  98.0   3E-06   9E-11   62.0   2.3   42   37-80      2-43  (92)
 13 >2ja9_A Exosome complex exonuc  97.9 3.9E-05 1.2E-09   54.3   6.8   41   37-79      5-45  (90)
 14 >2khj_A 30S ribosomal protein   97.9 2.6E-05 7.8E-10   55.5   5.8   98   14-202     7-104 (109)
 15 >2cqo_A Nucleolar protein of 4  97.8 7.4E-05 2.2E-09   52.4   7.4   91   31-211    14-107 (119)
 16 >1go3_E DNA-directed RNA polym  97.8 5.3E-05 1.6E-09   53.4   5.8   39   39-80      1-39  (107)
 17 >3cw2_C Translation initiation  97.8 8.8E-05 2.6E-09   51.9   6.7   75   34-198     6-82  (85)
 18 >2nn6_G Exosome complex exonuc  97.7 7.6E-05 2.2E-09   52.3   6.3   39   37-77      3-41  (87)
 19 >3go5_A Multidomain protein wi  97.7  0.0001 3.1E-09   51.4   6.2   37   37-74      3-40  (71)
 20 >2k52_A Uncharacterized protei  97.7 0.00012 3.6E-09   50.9   6.4   41   37-79      3-43  (80)
 21 >2nn6_I 3'-5' exoribonuclease   97.6 0.00016 4.7E-09   50.1   5.9   76   37-200     4-87  (94)
 22 >2a19_A EIF-2- alpha, eukaryot  97.6 0.00014 4.2E-09   50.4   5.6   41   37-79     13-55  (88)
 23 >2eqs_A ATP-dependent RNA heli  97.5  0.0003 8.8E-09   48.2   6.3   43   35-79      8-53  (103)
 24 >1yz6_A Probable translation i  97.5 0.00031 9.1E-09   48.1   6.3   43   36-80      7-51  (83)
 25 >3bzc_A TEX; helix-turn-helix,  97.5 5.6E-05 1.6E-09   53.3   2.3   87   35-211     9-95  (144)
 26 >3cdi_A Polynucleotide phospho  97.4 2.1E-05 6.3E-10   56.2   0.0   42   36-79    250-291 (349)
 27 >1kl9_A Eukaryotic translation  97.4 0.00039 1.2E-08   47.4   6.2   42   36-79     12-55  (88)
 28 >1y14_B B16, RPB7, DNA-directe  97.4 0.00035   1E-08   47.8   5.9   41   39-82      1-41  (89)
 29 >2id0_A Exoribonuclease 2; RNA  97.4 0.00036 1.1E-08   47.6   5.7   40   39-80      2-42  (86)
 30 >2waq_E DNA-directed RNA polym  97.3 0.00032 9.5E-09   48.0   4.9   39   39-80      1-39  (100)
 31 >1q8k_A Eukaryotic translation  97.3 0.00087 2.6E-08   45.0   6.8   42   36-79     10-53  (86)
 32 >1hh2_P NUSA, N utilization su  97.3 0.00069   2E-08   45.7   6.0   39   36-77      3-41  (87)
 33 >2b8k_G B16, DNA-directed RNA   97.1  0.0011 3.2E-08   44.3   5.8   84   39-203     1-84  (133)
 34 >3h0g_G DNA-directed RNA polym  97.1 0.00058 1.7E-08   46.2   4.2   39   39-80      1-39  (89)
 35 >1e3p_A Guanosine pentaphospha  97.0 0.00016 4.7E-09   50.1   0.8   42   36-79     73-114 (166)
 36 >2ckz_B C25, DNA-directed RNA   97.0  0.0024 7.1E-08   41.9   6.9   91   39-206     1-92  (138)
 37 >2ba1_A Archaeal exosome RNA b  96.9  0.0023 6.7E-08   42.1   6.0   40   38-79      3-52  (92)
 38 >2c35_B Human RPB7, DNA-direct  96.9  0.0015 4.4E-08   43.4   5.0   38   39-79      1-38  (92)
 39 >1luz_A Protein K3, protein K2  96.6   0.003 8.9E-08   41.2   4.4   42   35-79      7-50  (88)
 40 >3go5_A Multidomain protein wi  96.5  0.0088 2.6E-07   38.0   6.5   39   36-76     14-53  (84)
 41 >1a6f_A RNAse P protein, ribon  87.8    0.79 2.4E-05   24.4   4.2   75  203-277    27-115 (119)
 42 >2asb_A Transcription elongati  87.7    0.81 2.4E-05   24.3   4.2   39   36-74      4-47  (81)
 43 >2pe4_A Hyaluronidase-1; hyalu  86.4    0.74 2.2E-05   24.6   3.5   61  388-448    24-89  (147)
 44 >2vf7_A UVRA2, excinuclease AB  86.2    0.36 1.1E-05   26.8   1.8   36  480-515     5-40  (70)
 45 >1fcq_A Hyaluronoglucosaminida  83.8     1.1 3.2E-05   23.4   3.3   56  394-449    44-104 (159)
 46 >2hl7_A Cytochrome C-type biog  83.5     1.4   4E-05   22.8   3.7   56  481-554    26-81  (84)
 47 >1k0r_A NUSA; two component ar  82.1       3 8.8E-05   20.4   5.0   39   36-74     15-58  (92)
 48 >2atm_A Hyaluronoglucosaminida  81.4     1.5 4.5E-05   22.4   3.3   61  387-447    37-102 (153)
 49 >1d6t_A Ribonuclease P, RNAse   80.9     2.2 6.5E-05   21.3   4.0   75  202-276    25-113 (117)
 50 >2bx9_A Anti-trap, AT, tryptop  73.5     1.4 4.2E-05   22.6   1.3   24  478-501    20-43  (53)
 51 >2wp8_J Exosome complex exonuc  71.4     6.1 0.00018   18.3   6.4   36   42-79      2-38  (90)
 52 >3lcz_A YCZA, inhibitor of tra  69.5       2 5.8E-05   21.7   1.3   30  478-509    20-49  (53)
 53 >3fdr_A Tudor and KH domain-co  68.3     4.2 0.00012   19.4   2.7   42   39-82     41-87  (94)
 54 >2opv_A KHSRP protein; KH doma  66.2     6.7  0.0002   18.0   3.5   46  517-562    14-59  (85)
 55 >2ytv_A Cold shock domain-cont  65.5     5.9 0.00017   18.3   3.1   34   39-74      5-40  (79)
 56 >2jzx_A Poly(RC)-binding prote  64.9     8.2 0.00024   17.4   4.6   42  516-557     4-45  (81)
 57 >2e3u_A PH-DIM2P, hypothetical  63.6     8.6 0.00025   17.2   4.0   42  516-557    33-74  (109)
 58 >2ctk_A Vigilin; K homology ty  63.3     7.9 0.00023   17.5   3.4   42  516-557    16-57  (104)
 59 >1nz0_A Ribonuclease P protein  63.3     3.4  0.0001   20.0   1.5   70  202-271    28-111 (118)
 60 >1dar_A EF-G, elongation facto  62.8     8.9 0.00026   17.1   6.4   74  378-467   104-177 (283)
 61 >3i2z_B RNA chaperone, negativ  62.6       9 0.00026   17.1   6.0   38   40-77      3-41  (71)
 62 >1tua_A Hypothetical protein A  61.1       9 0.00027   17.1   3.3   42  516-557     3-44  (79)
 63 >1ec6_A RNA-binding protein NO  60.5     9.7 0.00029   16.8   4.5   42  518-559     4-45  (87)
 64 >2ctm_A Vigilin; K homology ty  60.3     6.4 0.00019   18.1   2.5   50  517-566    17-66  (95)
 65 >2jzx_A Poly(RC)-binding prote  60.2     9.8 0.00029   16.8   4.3   49  516-564     7-55  (79)
 66 >2r6f_A Excinuclease ABC subun  60.0     3.1 9.3E-05   20.2   0.8   24  473-496    29-54  (78)
 67 >1x4m_A FAR upstream element b  59.5      10  0.0003   16.7   4.3   49  516-564    14-62  (94)
 68 >1wvn_A Poly(RC)-binding prote  58.8     8.3 0.00024   17.3   2.8   48  518-565     7-55  (82)
 69 >2vf7_A UVRA2, excinuclease AB  58.4     3.5  0.0001   19.9   0.8   14  483-496    40-53  (77)
 70 >1dtj_A RNA-binding neurooncol  57.5     8.6 0.00026   17.2   2.7   43  518-560     4-46  (76)
 71 >2ctl_A Vigilin; K homology ty  56.6       7 0.00021   17.8   2.1   50  516-565    16-65  (97)
 72 >1we8_A Tudor and KH domain co  56.5      11 0.00033   16.4   3.3   47  516-562    14-60  (104)
 73 >2jvz_A KH type-splicing, FAR   56.5     9.1 0.00027   17.0   2.7   45  518-562     3-47  (81)
 74 >2hqx_A P100 CO-activator tudo  56.2       6 0.00018   18.3   1.7   44   38-81     14-60  (183)
 75 >1mhn_A SurviVal motor neuron   56.0     8.3 0.00024   17.3   2.4   34   39-74     17-53  (59)
 76 >1j4w_A FUSE binding protein;   55.3      12 0.00035   16.3   3.5   48  514-561    13-60  (86)
 77 >2jvz_A KH type-splicing, FAR   55.1     6.1 0.00018   18.2   1.6   50  513-562     6-55  (83)
 78 >3bdl_A Staphylococcal nucleas  54.8     7.5 0.00022   17.6   2.1   34   39-74     15-50  (59)
 79 >3krm_A Insulin-like growth fa  54.5      11 0.00032   16.5   2.9   49  517-565    85-133 (163)
 80 >2dgr_A Ring finger and KH dom  53.6     9.1 0.00027   17.0   2.3   49  516-566     9-57  (83)
 81 >2d9t_A Tudor domain-containin  53.5     8.8 0.00026   17.1   2.2   34   39-74     23-59  (78)
 82 >2anr_A Neuro-oncological vent  53.2      13 0.00037   16.0   4.6   49  516-564   103-151 (178)
 83 >2axy_A Poly(RC)-binding prote  51.7      13  0.0004   15.9   4.3   42  516-557     4-45  (73)
 84 >2elf_A Protein translation el  51.6      13  0.0004   15.9   7.7   70  378-462    87-157 (190)
 85 >1nlt_A Protein YDJ1, mitochon  51.6     5.9 0.00018   18.3   1.1   48  453-500    45-95  (102)
 86 >1exk_A DNAJ protein; extended  50.9     3.8 0.00011   19.7   0.0   16  479-494    48-63  (79)
 87 >1g5v_A SurviVal motor neuron   50.8     9.7 0.00029   16.8   2.1   35   38-74     23-60  (88)
 88 >1j4w_A FUSE binding protein;   50.1      14 0.00042   15.7   5.4   48  518-565     4-52  (88)
 89 >2cpq_A FragIle X mental retar  49.7      14 0.00042   15.7   3.5   41  516-556    14-54  (91)
 90 >2p2r_A Poly(RC)-binding prote  48.7      15 0.00044   15.6   5.1   50  516-565     4-54  (76)
 91 >2z0s_A Probable exosome compl  48.5     9.7 0.00029   16.8   1.8   40  518-557     2-41  (88)
 92 >2equ_A PHD finger protein 20-  48.2      15 0.00045   15.5   3.3   35   39-75     22-57  (74)
 93 >1x65_A UNR protein; cell-free  48.2      15 0.00045   15.5   7.1   35   39-75      5-40  (89)
 94 >1zzk_A Heterogeneous nuclear   47.4      11 0.00033   16.4   2.0   45  517-561     7-51  (82)
 95 >2bh8_A 1B11; transcription, m  45.5      17 0.00049   15.2   5.0   46   34-79      8-54  (71)
 96 >1m1q_A Small tetraheme cytoch  44.4       7 0.00021   17.8   0.6   14  480-493    57-70  (91)
 97 >2eqk_A Tudor domain-containin  44.4      15 0.00043   15.6   2.2   34   39-74     35-70  (85)
 98 >2hh3_A KH-type splicing regul  43.5      17 0.00052   15.1   2.5   46  516-561    10-55  (106)
 99 >1vef_A Acetylornithine/acetyl  43.1      18 0.00053   15.0   2.5   71  371-448     5-88  (122)
100 >1x4n_A FAR upstream element b  42.6      18 0.00054   14.9   4.1   47  515-561    13-59  (92)
101 >1vig_A Vigilin; RNA-binding p  41.0      11 0.00033   16.4   1.2   41  517-557     5-45  (71)
102 >2dgy_A MGC11102 protein; EIF-  40.5      17  0.0005   15.2   2.0   22  173-194    53-74  (111)
103 >1j5k_A Heterogeneous nuclear   40.1      20 0.00059   14.7   5.1   52  514-565    11-63  (89)
104 >2qnd_A FMR1 protein; KH domai  38.9      21 0.00061   14.6   2.5   40  517-556     4-43  (64)
105 >2ywe_A GTP-binding protein LE  37.8      22 0.00064   14.4   5.4   71  378-464   100-171 (187)
106 >2hh2_A KH-type splicing regul  36.3      11 0.00031   16.6   0.5   43  517-559     7-49  (107)
107 >1sff_A 4-aminobutyrate aminot  36.3      23 0.00067   14.3   4.6   78  371-452     4-97  (138)
108 >2cte_A Vigilin; K homology ty  36.3     7.4 0.00022   17.7  -0.3   41  517-557    17-57  (94)
109 >2gez_B L-asparaginase beta su  34.5      21 0.00063   14.5   1.8   26  350-375    76-101 (112)
110 >2ctt_A DNAJ homolog subfamily  33.3      14 0.00041   15.8   0.6   16  480-495    80-95  (104)
111 >2k3v_A Tetraheme cytochrome C  32.2      11 0.00032   16.5  -0.0   15  482-496    33-47  (86)
112 >3d0f_A Penicillin-binding 1 t  32.2      26 0.00078   13.8   6.0   37   39-77      2-38  (75)
113 >2r6f_A Excinuclease ABC subun  31.1      27 0.00081   13.7   2.3   35  482-516     2-36  (58)
114 >2rdo_7 EF-G, elongation facto  29.4      29 0.00086   13.5   6.4   78  378-471   109-189 (289)
115 >2wac_A CG7008-PA; unknown fun  29.1      29 0.00087   13.5   2.0   34   39-74     41-75  (83)
116 >1th8_B Anti-sigma F factor an  29.1      29 0.00087   13.5   7.3   88  414-532     5-92  (116)
117 >3cb4_D GTP-binding protein LE  28.3      30  0.0009   13.4   5.4   71  378-464    98-169 (185)
118 >3d3r_A Hydrogenase assembly c  26.7      32 0.00096   13.2   3.7   21   44-64     27-47  (73)
119 >2vnu_D Exosome complex exonuc  26.1      33 0.00098   13.1   5.6   36   42-79      2-38  (90)
120 >2hu9_A MERP, mercuric transpo  26.0      31 0.00091   13.3   1.4   20  482-501     2-21  (64)
121 >2diq_A Tudor and KH domain-co  25.5      25 0.00075   13.9   0.9   35   38-74     45-81  (110)
122 >1k3r_A Conserved protein MT00  24.3      36  0.0011   12.9   3.1   32   36-69     15-46  (76)
123 >2ba0_A Archeal exosome RNA bi  24.3      36  0.0011   12.9   2.7   39  519-557     3-41  (94)
124 >1h95_A CSD, Y-box binding pro  24.2      36  0.0011   12.9   5.8   40   38-77      4-44  (79)
125 >1w6s_A Methanol dehydrogenase  24.0      36  0.0011   12.9   1.7   16  375-390    57-72  (84)
126 >1jmx_A Amine dehydrogenase; o  23.1      38  0.0011   12.8   2.5   18  477-494     5-22  (80)
127 >2kcm_A Cold shock domain fami  23.0      38  0.0011   12.7   5.9   34   44-77      2-36  (74)
128 >3hcn_A Ferrochelatase, mitoch  22.7      38  0.0011   12.7   3.1   13  476-488   188-200 (216)
129 >2vy9_A Anti-sigma-factor anta  22.7      38  0.0011   12.7   9.1   89  413-532     4-92  (123)
130 >2je6_I RRP4, exosome complex   22.5      32 0.00095   13.2   0.9   39  519-557     2-40  (96)
131 >1p1j_A Inositol-3-phosphate s  22.4      31 0.00093   13.3   0.9   23   54-76     19-44  (44)
132 >2wjn_C Photosynthetic reactio  22.3      18 0.00052   15.0  -0.4   34  443-476    98-131 (159)
133 >1d2e_A Elongation factor TU (  21.5      40  0.0012   12.5   6.7   76  378-468    93-174 (197)
134 >2qnd_A FMR1 protein; KH domai  21.3      41  0.0012   12.5   3.7   42  518-559     4-46  (80)
135 >2ctf_A Vigilin; K homology ty  21.0      41  0.0012   12.5   1.6   40  517-556    27-67  (102)
136 >1pby_A Quinohemoprotein amine  21.0      39  0.0012   12.6   1.1   19  477-495     4-22  (79)
137 >1zbr_A AAQ65385, conserved hy  20.8      42  0.0012   12.4   1.9   28  342-369    25-54  (59)
138 >1g8p_A Magnesium-chelatase 38  20.7      42  0.0012   12.4   3.4   34  414-447   139-172 (218)
139 >1c9o_A CSPB, cold-shock prote  20.7      42  0.0012   12.4   4.9   33   44-76      3-35  (66)
140 >3hvm_A Agmatine deiminase; hy  20.6      42  0.0012   12.4   2.0   28  342-369    25-54  (59)
141 >1c3g_A Heat shock protein 40;  20.5      29 0.00085   13.6   0.3   13  482-494    24-36  (79)
142 >2kdx_A HYPA, hydrogenase/urea  20.4      32 0.00094   13.3   0.6   90  398-491     7-100 (119)
143 >1acv_A DSBA; disulfide oxidor  20.2      16 0.00046   15.4  -1.1   15  473-487    19-33  (105)
144 >2q2g_A HSP40 protein, heat sh  20.1      17 0.00051   15.1  -0.8   19  480-498    25-43  (85)
145 >2ctj_A Vigilin; K homology ty  20.0      43  0.0013   12.3   5.0   51  516-566    16-66  (95)

No 1  
>>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A (L:273-410)
Probab=100.00  E-value=0  Score=401.17  Aligned_cols=138  Identities=56%  Similarity=0.814  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             56776999999984222143678649983288069998237554445551147999999999999998731036863896
Q gi|254780751|r  346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVV  425 (723)
Q Consensus       346 f~~y~ie~~i~~~~~~~V~L~sGG~lvIe~TEALt~IDVNSG~~~~~~~~e~t~l~tNleAA~EIaRQlRLRnlgGiIvI  425 (723)
                      |+.|+|+.+|+.+++++||||||||||||+|||||+||||||+++++++.++|+++||+|||+|||||||||||||||||
T Consensus         1 F~~~~i~~~i~~~~~~~V~L~~Gg~lvIe~TEALt~IDVNsG~~~~~~~~~~~~~~~N~eAa~eIarqlrLRnigGiIvI   80 (138)
T 2bx2_L            1 FSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVI   80 (138)
T ss_dssp             HHHTTCHHHHHHTTCSEEECTTSCEEEEEECSSCEEEEEECCC----CCHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHCHHHHHHHHHHCCEECCCCEEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             78718499999986304544788089993154058985046654567777788999989999999987657516864997


Q ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCCHHHHHCCCCCCC
Q ss_conf             03347988889999999999731278728998604861489851566630112100236754
Q gi|254780751|r  426 DFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC  487 (723)
Q Consensus       426 DFIdM~~~~~~~~v~~~l~~~l~~D~~~~~v~~it~lGLlEltRkR~r~sl~e~~~~~c~~c  487 (723)
                      |||||+++++++.|++.|+++|++|+++++|++||+||||||||||.|+||.    ++||+|
T Consensus        81 DFI~m~~~~~~~~v~~~l~~~~~~D~~~~~v~~~t~lGL~EitRkR~~~sl~----e~cp~C  138 (138)
T 2bx2_L           81 DFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLG----ESSHHV  138 (138)
T ss_dssp             ECCCCSSHHHHHHHHHHHHHHTTTCSSCEEEEEECTTSEEEEEECCCSCCHH----HHHCCC
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEECCCCCCCHH----HHHCCC
T ss_conf             2566666789999999999998516865057456666338886144556601----220433


No 2  
>>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A (L:411-517)
Probab=99.77  E-value=1.8e-18  Score=147.01  Aligned_cols=96  Identities=26%  Similarity=0.400  Sum_probs=90.0

Q ss_pred             CCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHH-CCEEEEEECCCCCCCC
Q ss_conf             675465378606114689988788999730364310135769999987302379999999984-8879998478778863
Q gi|254780751|r  484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKL  562 (723)
Q Consensus       484 c~~c~g~g~~~~~~~~~~~~~r~i~~~~~~~~~~~i~v~~~~~va~~lln~kr~~l~~lE~~~-~~~I~i~~d~~l~~~~  562 (723)
                      ||+|+|+|+|+|.+|++++|+|+|++.+.+.+...+.+.+||+||.||+|++|..|.+||.+| |+.|.|.+|++++.++
T Consensus         1 CP~C~G~G~V~s~es~a~~i~R~I~~~~~~~~~~~i~v~v~p~Va~~l~n~k~~~l~~lE~~~~g~~I~i~~d~~~~~~~   80 (107)
T 2bx2_L            1 CPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPH   80 (107)
T ss_dssp             CSSSSSSSCCCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECHHHHHHHTTTTHHHHHHHHHHTTTCEEEEEECTTCCTTC
T ss_pred             CCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf             88878866875789999999999999987668866999989999999973129999999998769179999579887775


Q ss_pred             EEEEECCCCCCCCCCCC
Q ss_conf             38971554433333211
Q gi|254780751|r  563 FYIEKGSPVQALVNTGH  579 (723)
Q Consensus       563 f~Ier~~~~~~~~~~~~  579 (723)
                      |.|...+..+......+
T Consensus        81 f~i~~~~~~~~~~~~~~   97 (107)
T 2bx2_L           81 YHVLRVRKGEETPTLSY   97 (107)
T ss_dssp             CEEEEEETTCCCCCCGG
T ss_pred             EEEEECCCCCCCCCCCE
T ss_conf             39998448986565462


No 3  
>>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A (L:127-208)
Probab=99.72  E-value=1.1e-17  Score=141.66  Aligned_cols=81  Identities=35%  Similarity=0.640  Sum_probs=71.7

Q ss_pred             CCCCCCCEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             34576523442278875124204688689999999998630025871699850455757999999999999999877642
Q gi|254780751|r  200 LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA  279 (723)
Q Consensus       200 isl~Gry~Vl~P~~~~~~~iSrki~~~~~r~~l~~~~~~~~~~~~~G~IiRT~a~~~~~~~l~~d~~~L~~~w~~i~~~~  279 (723)
                      |||||||+||||+.+..++|||||.+.++|.+|+.+... ..|+++|+||||+|+++++++|..|+++|.++|+.|.+++
T Consensus         1 Isl~GrylVl~P~~~~ig~iSrkI~d~~~r~~l~~l~~~-~~~~~~G~IiRT~A~~a~~e~i~~e~~~L~~~w~~I~~~~   79 (82)
T 2bx2_L            1 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASL-ELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAA   79 (82)
T ss_dssp             CCEECSSEEEETTCTTCCEECTTCC------HHHHHTTS-CCCTTCEEEECGGGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             456565279824777656522335717899999999972-5888752898610248887999988999888889888776


Q ss_pred             CC
Q ss_conf             01
Q gi|254780751|r  280 LN  281 (723)
Q Consensus       280 ~~  281 (723)
                      ..
T Consensus        80 ~~   81 (82)
T 2bx2_L           80 ES   81 (82)
T ss_dssp             HT
T ss_pred             HC
T ss_conf             42


No 4  
>>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A (L:1-42,L:219-272)
Probab=99.46  E-value=3.3e-13  Score=110.44  Aligned_cols=53  Identities=30%  Similarity=0.542  Sum_probs=48.9

Q ss_pred             CHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHH-HHCCCCHHHHCCCCCHH
Q ss_conf             588888875237663111103532036678889876-31012112201344203
Q gi|254780751|r  293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL-MPSYARIVRQYEDPHPI  345 (723)
Q Consensus       293 ~~~~~~ird~~~~~~~~i~vd~~~~~~~~~~~~~~~-~p~~~~~v~~~~~~~~l  345 (723)
                      +++.|++||+++.++++|+||+++.|+.+++|++.+ +|.+..+|++|+++.||
T Consensus        43 DLi~RviRD~~t~dv~eIvVD~~e~Ye~v~~fv~~~~~P~l~~rVklY~g~~PI   96 (96)
T 2bx2_L           43 NVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPL   96 (96)
T ss_dssp             CHHHHHHHHHCCTTEEEEEESCHHHHHHHHHHHHHTTCHHHHTTEEECCCSSCH
T ss_pred             CHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCH
T ss_conf             489999998614143410068788999999863442287533558954799787


No 5  
>>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A (L:43-126,L:209-218)
Probab=99.44  E-value=3.1e-13  Score=110.59  Aligned_cols=85  Identities=55%  Similarity=0.881  Sum_probs=72.8

Q ss_pred             CCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             04287879899783638823135327897713022213712102898899999998886311111000000011122334
Q gi|254780751|r   37 QIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN  116 (723)
Q Consensus        37 ~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (723)
                      +.+|+||.|+|++|.|+|.+||||||.+++||||++++.++||..+..                                
T Consensus         1 ~kvG~i~~G~V~~I~~f~~GaFVel~~~~~Glihis~l~~~~~~~~~~--------------------------------   48 (94)
T 2bx2_L            1 QKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYS--------------------------------   48 (94)
T ss_dssp             CCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC------------------------------------
T ss_pred             CCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEHHHCCHHHCCCCCC--------------------------------
T ss_conf             877878999995327887668995089974588858838555045533--------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf             44334454222233445543322223432112211121100001223444421331068885799984033323456410
Q gi|254780751|r  117 DHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAV  196 (723)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~ilVQV~ke~~~~Kga~l  196 (723)
                                                                     ..+...+.+.++.||.|+|||++....+|++.|
T Consensus        49 -----------------------------------------------~~~~~~~~~~~~~Gd~V~V~V~~vd~~~~~i~l   81 (94)
T 2bx2_L           49 -----------------------------------------------AHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL   81 (94)
T ss_dssp             --------------------------------------------------CCCGGGTCCTTCEEEEEEEECCCTTCCCEE
T ss_pred             -----------------------------------------------CCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCC
T ss_conf             -----------------------------------------------345656677357998888985145444557553


Q ss_pred             CCCC
Q ss_conf             1233
Q gi|254780751|r  197 TTYL  200 (723)
Q Consensus       197 T~~i  200 (723)
                      |...
T Consensus        82 sl~~   85 (94)
T 2bx2_L           82 TTFP   85 (94)
T ss_dssp             ESSC
T ss_pred             CCCC
T ss_conf             3459


No 6  
>>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} (A:)
Probab=98.19  E-value=4.6e-06  Score=60.75  Aligned_cols=96  Identities=11%  Similarity=0.106  Sum_probs=74.3

Q ss_pred             EECCEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             98998999996073346042878798997836388231353278977130222137121028988999999988863111
Q gi|254780751|r   20 LRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTD   99 (723)
Q Consensus        20 ~e~g~l~e~~~e~~~~~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~   99 (723)
                      .-.-+..+..++..-....+|.||.|+|++|.|.  ++||++|.+-.||||++|+..+++.                   
T Consensus        11 ~~s~k~~~~~~~~~~~~~~~G~iv~G~V~~v~~~--G~fV~l~~~~~g~i~~~els~~~~~-------------------   69 (115)
T 2khi_A           11 SSGLVPRGSHWVAIAKRYPEGTKLTGRVTNLTDY--GCFVEIEEGVEGLVHVSEMDWTNKN-------------------   69 (115)
T ss_dssp             ----------CCCSSCSSCSSCEEEEEEEEEETT--EEEEECSTTCEEEEETTSSSCSSTT-------------------
T ss_pred             CCCCCCCCCCHHHHHHHCCCCCEEEEEEEEEECC--EEEEEECCCCCEEEEEEEECCCCCC-------------------
T ss_conf             2474447997899996589989999999999687--5999989857223787631344422-------------------


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCE
Q ss_conf             11000000011122334443344542222334455433222234321122111211000012234444213310688857
Q gi|254780751|r  100 SEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI  179 (723)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~  179 (723)
                                                                                          ..+.++++.||.
T Consensus        70 --------------------------------------------------------------------~~~~~~~~~G~~   81 (115)
T 2khi_A           70 --------------------------------------------------------------------IHPSKVVNVGDV   81 (115)
T ss_dssp             --------------------------------------------------------------------CSSTTTCCTTCE
T ss_pred             --------------------------------------------------------------------CCCEEEEECCCE
T ss_conf             --------------------------------------------------------------------232048843866


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             9998403332345641012334576
Q gi|254780751|r  180 LLVQIVKEERGNKGAAVTTYLSLAG  204 (723)
Q Consensus       180 ilVQV~ke~~~~Kga~lT~~isl~G  204 (723)
                      |.|.|.+--..++-..||..-..+.
T Consensus        82 v~v~V~~vd~~~~ri~lS~k~~~~~  106 (115)
T 2khi_A           82 VEVMVLDIDEERRRISLGLKQCKAN  106 (115)
T ss_dssp             EEEEEEEEETTTTEEEECCCCCCSS
T ss_pred             EEEEEEEEECCCCEEEEEEEECCCC
T ss_conf             9999999989999999998765409


No 7  
>>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} (A:)
Probab=98.08  E-value=9.7e-06  Score=58.54  Aligned_cols=93  Identities=17%  Similarity=0.103  Sum_probs=76.5

Q ss_pred             CCCCCCCEEEEEEEEECCCCCEEEEEECC-CCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             46042878798997836388231353278-97713022213712102898899999998886311111000000011122
Q gi|254780751|r   35 KKQIKGNIYLAKVTRVEPSLQAAFVDYGG-NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVT  113 (723)
Q Consensus        35 ~~~~~GnIY~G~V~~V~p~lqAAFVdiG~-~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~  113 (723)
                      .....|.||.|+|++|.|.  .|||+++. +-.||||++++..+||.                                 
T Consensus        17 ~~l~~G~~v~g~V~~v~~~--G~fV~l~~~~~~g~i~~sels~~~~~---------------------------------   61 (119)
T 1wi5_A           17 EALKPGMLLTGTVSSLEDH--GYLVDIGVDGTRAFLPLLKAQEYIRQ---------------------------------   61 (119)
T ss_dssp             TTCCTTCEEEEEEEEECSS--EEEEECCCSSCEEEEEHHHHHHHHHH---------------------------------
T ss_pred             HHCCCCCEEEEEEEEEEEE--EEEEECCCCCCEEEEEHHHHCCCCCC---------------------------------
T ss_conf             3179997899999988401--89995145540278769993521123---------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCC
Q ss_conf             33444334454222233445543322223432112211121100001223444421331068885799984033323456
Q gi|254780751|r  114 IPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKG  193 (723)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~ilVQV~ke~~~~Kg  193 (723)
                                                                            ....++++.||.|.|+|.+=-..++.
T Consensus        62 ------------------------------------------------------~~~~~~~~vGd~i~v~V~~vd~~~~~   87 (119)
T 1wi5_A           62 ------------------------------------------------------KNKGAKLKVGQYLNCIVEKVKGNGGV   87 (119)
T ss_dssp             ------------------------------------------------------HSSSCCCCTTCEEEEEEEECCTTSCE
T ss_pred             ------------------------------------------------------CCCCCEEEEEEEEEEEEEEEECCCCE
T ss_conf             ------------------------------------------------------47300021001899999998379858


Q ss_pred             CCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             41012334576523442278875
Q gi|254780751|r  194 AAVTTYLSLAGRYSVLMPNTSKG  216 (723)
Q Consensus       194 a~lT~~isl~Gry~Vl~P~~~~~  216 (723)
                      ..||..-+..+..-........+
T Consensus        88 i~ls~k~~~~~~~~~~~~~~~~~  110 (119)
T 1wi5_A           88 VSLSVGHSEVSTAIATEQQSWNL  110 (119)
T ss_dssp             EEEECCCCCSCCCCCCSSCCCCC
T ss_pred             EEEECHHHHHHHHHHHHHHCCCC
T ss_conf             99840197666667667642675


No 8  
>>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} (I:71-155)
Probab=98.07  E-value=7.8e-06  Score=59.19  Aligned_cols=40  Identities=20%  Similarity=0.169  Sum_probs=36.7

Q ss_pred             CCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCC
Q ss_conf             428787989978363882313532789771302221371210
Q gi|254780751|r   38 IKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYY   79 (723)
Q Consensus        38 ~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~   79 (723)
                      .+|+||.|+|.+|.|  .+|||+||.+..||||++|+..+|+
T Consensus         3 ~~G~~v~g~V~~v~~--~G~fV~i~~~~~Gli~~s~i~~~~~   42 (85)
T 2je6_I            3 KINDIVIGLVEDVEI--YGWVVDIKAPYKAYLPASNLLGRSI   42 (85)
T ss_dssp             CTTCEEEEEEEEECS--SEEEEECSSSSCEEEEHHHHHTSCC
T ss_pred             CCCCEEEEEEEEEEC--CEEEEECCCCCCCEEEHHHCCCCCC
T ss_conf             999999999999335--4799984897222400554257542


No 9  
>>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} (A:1-147)
Probab=98.01  E-value=1.4e-05  Score=57.42  Aligned_cols=45  Identities=16%  Similarity=0.155  Sum_probs=39.2

Q ss_pred             CCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCC
Q ss_conf             33460428787989978363882313532789771302221371210
Q gi|254780751|r   33 EHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYY   79 (723)
Q Consensus        33 ~~~~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~   79 (723)
                      ......+|++|.|+|++|.+.  .|||++|.+..||||++|+.++|+
T Consensus        60 ~~~~~~~G~iv~G~V~~i~~~--G~fV~i~~~~~gli~~sei~~~~~  104 (147)
T 2z0s_A           60 EIYVPQAGDVVIGLIQSVGIM--NWFVDINSPYVAVLSVQDFLGRPF  104 (147)
T ss_dssp             CCCCCCTTCCEEEEEEEECSS--EEEEECSSSSCEEEEHHHHHTSCC
T ss_pred             CCCCCCCCCEEEEEEEEEECC--EEEEECCCCCEEEECHHHCCCCCC
T ss_conf             753599999999999897267--199985897203726899075332


No 10 
>>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} (A:54-135)
Probab=98.00  E-value=2.2e-05  Score=56.02  Aligned_cols=40  Identities=20%  Similarity=0.180  Sum_probs=36.4

Q ss_pred             CCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCC
Q ss_conf             428787989978363882313532789771302221371210
Q gi|254780751|r   38 IKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYY   79 (723)
Q Consensus        38 ~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~   79 (723)
                      .+|.||.|+|++|.|.  .|||+||.+..||||++|+.++++
T Consensus         3 ~~G~~v~g~V~~i~~~--g~~V~l~~~~~g~i~~sel~~~~~   42 (82)
T 2ba0_A            3 SVGDVVIGIIREVAAN--GWAVDIYSPYQAFLPVSENPEMKP   42 (82)
T ss_dssp             CTTCEEEEEEEEECSS--EEEEECSSSSCEEEEGGGCTTCCT
T ss_pred             CCCCEEEEEEEEECCC--EEEEECCCCCCEEEEHHHCCCCCH
T ss_conf             8999999999576165--199980897337987676766101


No 11 
>>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis} (A:)
Probab=97.98  E-value=2.2e-05  Score=56.01  Aligned_cols=100  Identities=17%  Similarity=0.272  Sum_probs=78.8

Q ss_pred             CCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             60428787989978363882313532789771302221371210289889999999888631111100000001112233
Q gi|254780751|r   36 KQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIP  115 (723)
Q Consensus        36 ~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (723)
                      ...+|.||.|+|++|.+.  ++||+++.+-.||+|.+|+..+|+.                                   
T Consensus         4 ~~~~G~iv~g~V~~v~~~--G~~V~l~~~i~G~i~~sels~~~~~-----------------------------------   46 (130)
T 2k4k_A            4 KFEVGSVYTGKVTGLQAY--GAFVALDEETQGLVHISEVTHGFVK-----------------------------------   46 (130)
T ss_dssp             CCCTTCEEEEEEEEEETT--EEEEEEETTEEEEEEGGGTSSSCCS-----------------------------------
T ss_pred             CCCCCCEEEEEEEEEECC--EEEEEECCCCEEEEEEEEECCEECC-----------------------------------
T ss_conf             468999999999999787--6999979995899873010100011-----------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCCC
Q ss_conf             44433445422223344554332222343211221112110000122344442133106888579998403332345641
Q gi|254780751|r  116 NDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAA  195 (723)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~ilVQV~ke~~~~Kga~  195 (723)
                                                                           .+.+.++.||.|.|.|..-...++...
T Consensus        47 -----------------------------------------------------~~~~~~~~G~~i~~~V~~vd~~~~~i~   73 (130)
T 2k4k_A           47 -----------------------------------------------------DINEHLSVGDEVQVKVLAVDEEKGKIS   73 (130)
T ss_dssp             -----------------------------------------------------CGGGTCCTTCEEEEEEEEEETTTTEEE
T ss_pred             -----------------------------------------------------CCCCCCCCCCEEEEEEEEEECCCCEEE
T ss_conf             -----------------------------------------------------223345699899999999978999899


Q ss_pred             CCCCCC--CCCCCEEECCCCCCCCEEEECCCCH
Q ss_conf             012334--5765234422788751242046886
Q gi|254780751|r  196 VTTYLS--LAGRYSVLMPNTSKGETISRKITNP  226 (723)
Q Consensus       196 lT~~is--l~Gry~Vl~P~~~~~~~iSrki~~~  226 (723)
                      ||....  -++......++. ...+.+.++.+.
T Consensus        74 LS~k~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  105 (130)
T 2k4k_A           74 LSIRATQAAPEKKESKPRKP-KAAQVSEEASTP  105 (130)
T ss_dssp             EESHHHHHSCCCCSCCTTTT-CTTCCSCCCSCS
T ss_pred             EEEEECCCCCHHHHHHHCCC-CCCCCEEEECCC
T ss_conf             99677556914554311146-666423474265


No 12 
>>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} (H:92-183)
Probab=97.98  E-value=3e-06  Score=62.04  Aligned_cols=42  Identities=14%  Similarity=0.132  Sum_probs=38.3

Q ss_pred             CCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCC
Q ss_conf             04287879899783638823135327897713022213712102
Q gi|254780751|r   37 QIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQ   80 (723)
Q Consensus        37 ~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~   80 (723)
                      ..+|+||.|+|++|.|  .+||||||....||||++++..+|+.
T Consensus         2 P~vGdiv~G~V~~v~~--~g~fV~i~~~~~gllhis~i~~~~~~   43 (92)
T 2nn6_H            2 GEVGDIVVGRITEVQQ--KRWKVETNSRLDSVLLLSSMNLPGGE   43 (92)
T ss_dssp             CCSSBCCCEEEEEEET--TEEEEECSSSSCEEEESSCCC-----
T ss_pred             CCCCCEEEEEEEEEEC--CEEEEECCCCCCCEECCCCCCCCCCC
T ss_conf             9999999999988725--55999838865535424201367611


No 13 
>>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} (A:1-90)
Probab=97.90  E-value=3.9e-05  Score=54.33  Aligned_cols=41  Identities=5%  Similarity=-0.075  Sum_probs=37.1

Q ss_pred             CCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCC
Q ss_conf             0428787989978363882313532789771302221371210
Q gi|254780751|r   37 QIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYY   79 (723)
Q Consensus        37 ~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~   79 (723)
                      ..+|.||.|+|++|.+.  +|||+||.+..||||.+|+.++|+
T Consensus         5 pk~G~~v~G~V~~v~~~--g~~V~l~~~~~g~l~~s~~~~~~~   45 (90)
T 2ja9_A            5 PSVNDFVIGVIIGTFSD--SYKVSLQNFSSSVSLSYMAFPNAS   45 (90)
T ss_dssp             CCTTCEEEEEEEEECSS--EEEEESSTTSCCEEEETTSSTTCC
T ss_pred             CCCCCEEEEEEEEECCC--EEEEEECCCCHHHHCCCCCCCCCC
T ss_conf             99989999999897288--089993897365407655466612


No 14 
>>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} (A:)
Probab=97.89  E-value=2.6e-05  Score=55.50  Aligned_cols=98  Identities=18%  Similarity=0.142  Sum_probs=72.6

Q ss_pred             EEEEEEEECCEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             07999998998999996073346042878798997836388231353278977130222137121028988999999988
Q gi|254780751|r   14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKES   93 (723)
Q Consensus        14 e~Rvav~e~g~l~e~~~e~~~~~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~   93 (723)
                      ..|+++--...+.+. .+........|+||.|+|++|.|.  ++||++|.+-.||+|.+++..+|..             
T Consensus         7 ~~~~~~s~k~~~~~~-~~~~~~~~~~G~iv~g~V~~v~~~--G~~V~~~~~~~G~v~~s~l~~~~~~-------------   70 (109)
T 2khj_A            7 HHHHSSGLVPRGSHM-FNNWVALNKKGAIVTGKVTAVDAK--GATVELADGVEGYLRASEASRDRVE-------------   70 (109)
T ss_dssp             --------------C-HHHHTTTCCSSSEEEEEEEEECSS--CEEEECSTTCBCCBCTTCCCSSSSS-------------
T ss_pred             CCCCCCCCCCCCCCH-HHHHHHHCCCCCEEEEEEEEEECC--EEEEEECCEEEEHEEHHHHCCCCCC-------------
T ss_conf             432465731866670-999997589999999999999896--8999989818601102242445314-------------


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf             86311111000000011122334443344542222334455433222234321122111211000012234444213310
Q gi|254780751|r   94 NIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEV  173 (723)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  173 (723)
                                                                                                 ...+.
T Consensus        71 ---------------------------------------------------------------------------~~~~~   75 (109)
T 2khj_A           71 ---------------------------------------------------------------------------DATLV   75 (109)
T ss_dssp             ---------------------------------------------------------------------------SGGGS
T ss_pred             ---------------------------------------------------------------------------CHHHH
T ss_conf             ---------------------------------------------------------------------------97782


Q ss_pred             CCCCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             68885799984033323456410123345
Q gi|254780751|r  174 IKNRQILLVQIVKEERGNKGAAVTTYLSL  202 (723)
Q Consensus       174 lk~gq~ilVQV~ke~~~~Kga~lT~~isl  202 (723)
                      ++.||.|-|.|.+-...++...||..-+.
T Consensus        76 ~~vG~~v~v~V~~vd~~~~~i~lSlk~~~  104 (109)
T 2khj_A           76 LSVGDEVEAKFTGVDRKNRAISLSVRAKD  104 (109)
T ss_dssp             CCTTCEEEEEEEEEETTTTEEEEETTSSS
T ss_pred             EECCCEEEEEEEEEECCCCEEEEEEEECC
T ss_conf             03242799999999899999999834455


No 15 
>>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=97.84  E-value=7.4e-05  Score=52.40  Aligned_cols=91  Identities=15%  Similarity=0.167  Sum_probs=66.7

Q ss_pred             CCCCCCCCCCCEEEEEEEEECCCCCEEEEEEC-CCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             07334604287879899783638823135327-89771302221371210289889999999888631111100000001
Q gi|254780751|r   31 ESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG-GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTH  109 (723)
Q Consensus        31 e~~~~~~~~GnIY~G~V~~V~p~lqAAFVdiG-~~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~~~~~~~~~~~  109 (723)
                      +.......+|.||.|+|.+|.+.  .|||+++ .+..||+|++|+.++|+.                             
T Consensus        14 ~~~~~~~~~G~vv~g~V~~I~~~--G~fV~l~~~~~~Gli~~sels~~~~~-----------------------------   62 (119)
T 2cqo_A           14 ETMENLPALYTIFQGEVAMVTDY--GAFIKIPGCRKQGLVHRTHMSSCRVD-----------------------------   62 (119)
T ss_dssp             CCSCCSCCTTCEEEEEEEEEETT--EEEEECTTCSSCEEEEHHHHCSSCCS-----------------------------
T ss_pred             CHHHCCCCCCCEEEEEEEEEECC--EEEEEECCCCEEEEEEEHHCCCCCCC-----------------------------
T ss_conf             11342876784799999999556--88999379743578610110455667-----------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCC
Q ss_conf             11223344433445422223344554332222343211221112110000122344442133106888579998403332
Q gi|254780751|r  110 GDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEER  189 (723)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~ilVQV~ke~~  189 (723)
                                                                                 .+.+.++.||.|-|.|+.-..
T Consensus        63 -----------------------------------------------------------~~~~~~~vG~~v~v~V~~vd~   83 (119)
T 2cqo_A           63 -----------------------------------------------------------KPSEIVDVGDKVWVKLIGREM   83 (119)
T ss_dssp             -----------------------------------------------------------CHHHHCCTTCEEEEEEEEEEE
T ss_pred             -----------------------------------------------------------CHHHEECCCCEEEEEEEEEEC
T ss_conf             -----------------------------------------------------------987802799999999999977


Q ss_pred             CCCCCC--CCCCCCCCCCCEEECC
Q ss_conf             345641--0123345765234422
Q gi|254780751|r  190 GNKGAA--VTTYLSLAGRYSVLMP  211 (723)
Q Consensus       190 ~~Kga~--lT~~isl~Gry~Vl~P  211 (723)
                      .++.-+  ||..-..+.....+.+
T Consensus        84 ~~~~~~vsLs~k~~~~~~~~~~~~  107 (119)
T 2cqo_A           84 KNDRIKVSLSMKVVNQGTGKDLDP  107 (119)
T ss_dssp             CSSCEEEEEESTTBCSSSCCBSCT
T ss_pred             CCCCCEEEEEEEECCCCCCHHCCC
T ss_conf             678648873601567796034285


No 16 
>>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} (E:81-187)
Probab=97.78  E-value=5.3e-05  Score=53.43  Aligned_cols=39  Identities=23%  Similarity=0.318  Sum_probs=35.5

Q ss_pred             CCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCC
Q ss_conf             287879899783638823135327897713022213712102
Q gi|254780751|r   39 KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQ   80 (723)
Q Consensus        39 ~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~   80 (723)
                      +|.+|.|+|++|.|.  +|||+|+ +..||+|++++..+||.
T Consensus         1 VG~~~~g~V~~i~~~--G~fV~l~-g~~Glv~is~l~~~~~~   39 (107)
T 1go3_E            1 MYELIEGEVVDVVEF--GSFVRLG-PLDGLIHVSQIMDDYVS   39 (107)
T ss_dssp             TTCEEEEEEEEEETT--EEEEECS-SSEEEEEGGGSCSSCEE
T ss_pred             CCCEEEEEEEEEEEE--EEEEEEC-CCEEEEEEHHCCCCCEE
T ss_conf             898999999999732--9999955-80599981132898586


No 17 
>>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B (C:1-85)
Probab=97.75  E-value=8.8e-05  Score=51.88  Aligned_cols=75  Identities=23%  Similarity=0.454  Sum_probs=61.0

Q ss_pred             CCCCCCCCEEEEEEEEECCCCCEEEEEECC--CCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             346042878798997836388231353278--977130222137121028988999999988863111110000000111
Q gi|254780751|r   34 HKKQIKGNIYLAKVTRVEPSLQAAFVDYGG--NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD  111 (723)
Q Consensus        34 ~~~~~~GnIY~G~V~~V~p~lqAAFVdiG~--~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~~~~~~~~~~~~~  111 (723)
                      -.....|+||.|+|++|.+.  +|||++|.  +-.||+|.+|+.++|+.                               
T Consensus         6 ~~~~~~G~~v~g~V~~i~~~--G~~V~l~~~~~i~G~i~~s~ls~~~~~-------------------------------   52 (85)
T 3cw2_C            6 SKLPSEGEILIATVKQVFDY--GSYVSLDEYGGLQAFLPWSEVSSKWVK-------------------------------   52 (85)
T ss_dssp             SSSCCTTCEEEEEEEECCSS--SBEEEETTTTSEECBBCGGGSSCSSCC-------------------------------
T ss_pred             CCCCCCCCEEEEEEEEEECC--EEEEEECCCCCCEEEEEHHHCCCCCCC-------------------------------
T ss_conf             78989999999999999755--489997567990899898995886558-------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCC
Q ss_conf             22334443344542222334455433222234321122111211000012234444213310688857999840333234
Q gi|254780751|r  112 VTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGN  191 (723)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~ilVQV~ke~~~~  191 (723)
                                                                               ...+.++.||.|-|.|.+--..+
T Consensus        53 ---------------------------------------------------------~~~~~~~vG~~V~v~V~~vd~~~   75 (85)
T 3cw2_C           53 ---------------------------------------------------------NIRDVLKENRKVIVKVIRVDRRK   75 (85)
T ss_dssp             ---------------------------------------------------------CHHHHSCTTCEEEEEECCCCSSS
T ss_pred             ---------------------------------------------------------CHHHHCCCCCEEEEEEEEEECCC
T ss_conf             ---------------------------------------------------------98881889999999996652557


Q ss_pred             CCCCCCC
Q ss_conf             5641012
Q gi|254780751|r  192 KGAAVTT  198 (723)
Q Consensus       192 Kga~lT~  198 (723)
                      +...||.
T Consensus        76 ~ri~LS~   82 (85)
T 3cw2_C           76 GTVDVSL   82 (85)
T ss_dssp             CCCBEES
T ss_pred             CCEEEEE
T ss_conf             4437898


No 18 
>>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} (G:123-209)
Probab=97.75  E-value=7.6e-05  Score=52.33  Aligned_cols=39  Identities=26%  Similarity=0.350  Sum_probs=34.6

Q ss_pred             CCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCC
Q ss_conf             04287879899783638823135327897713022213712
Q gi|254780751|r   37 QIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD   77 (723)
Q Consensus        37 ~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~   77 (723)
                      ..+|.|+.|+|++|.+  .+||||||.+..||||.+++..+
T Consensus         3 P~~GdiV~G~V~~i~~--~g~fVdi~~~~~g~l~is~~~~~   41 (87)
T 2nn6_G            3 PVKGDHVIGIVTAKSG--DIFKVDVGGSEPASLSYLSFEGA   41 (87)
T ss_dssp             CCSSEEEEEEEEEEET--TEEEEECSSSSCCCEESCSSSCC
T ss_pred             CCCCCEEEEEEEEECC--CEEEEECCCCCCEEECCHHCCCC
T ss_conf             9998999999989828--73899848985048750206770


No 19 
>>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae TIGR4} (A:65-135)
Probab=97.68  E-value=0.0001  Score=51.39  Aligned_cols=37  Identities=22%  Similarity=0.292  Sum_probs=32.9

Q ss_pred             CCCCCEEEEEEEEECCCCCEEEEEECC-CCCCCCCHHHC
Q ss_conf             042878798997836388231353278-97713022213
Q gi|254780751|r   37 QIKGNIYLAKVTRVEPSLQAAFVDYGG-NRHGFLPFLEI   74 (723)
Q Consensus        37 ~~~GnIY~G~V~~V~p~lqAAFVdiG~-~k~gFL~~~ei   74 (723)
                      -.+|.+|.++|.++.+.+ .||||+|. +|.+|+|++|.
T Consensus         3 i~vg~~~~lkVv~v~~~~-GaFvd~Glp~KD~Lvp~~e~   40 (71)
T 3go5_A            3 ATQDQFGWGRVTEVRKDL-GVFVDTGLPDKEIVVSLDIL   40 (71)
T ss_dssp             SCSSSCEEEEEEEEETTT-EEEEECSCTTCCEEEEGGGS
T ss_pred             EECCCEEEEEEEEEECCC-CEEEEECCCCCCCCCCHHHC
T ss_conf             754998999999995584-08999278851033506656


No 20 
>>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii} (A:)
Probab=97.67  E-value=0.00012  Score=50.88  Aligned_cols=41  Identities=24%  Similarity=0.331  Sum_probs=36.4

Q ss_pred             CCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCC
Q ss_conf             0428787989978363882313532789771302221371210
Q gi|254780751|r   37 QIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYY   79 (723)
Q Consensus        37 ~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~   79 (723)
                      ..+|.||.|+|++|.+  .+|||+++.+..||||.+|+..+|+
T Consensus         3 ~~~G~~~~g~V~~v~~--~G~fV~l~~~i~Gli~~~~ls~~~~   43 (80)
T 2k52_A            3 VEPGKFYKGVVTRIEK--YGAFINLNEQVRGLLRPRDMISLRL   43 (80)
T ss_dssp             CCTTCEEEEEEEEEET--TEEEEEEETTEEEEECGGGCSSCCG
T ss_pred             CCCCCEEEEEEEEEEC--CEEEEEECCCEEEEEEHHHCCCCCC
T ss_conf             7799999999999978--7799996555789999126256423


No 21 
>>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} (I:76-169)
Probab=97.58  E-value=0.00016  Score=50.07  Aligned_cols=76  Identities=16%  Similarity=0.115  Sum_probs=58.3

Q ss_pred             CCCCCEEEEEEEEECCCCCEEEEEECC--------CCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             042878798997836388231353278--------977130222137121028988999999988863111110000000
Q gi|254780751|r   37 QIKGNIYLAKVTRVEPSLQAAFVDYGG--------NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVT  108 (723)
Q Consensus        37 ~~~GnIY~G~V~~V~p~lqAAFVdiG~--------~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~~~~~~~~~~  108 (723)
                      ..+|.|+.|+|++|.+  ..|||+|+.        +-.||+|.+|+.++|..                            
T Consensus         4 pkvG~iv~G~V~~v~~--~G~fV~i~~~~~~~l~~~i~Gli~~seis~~~v~----------------------------   53 (94)
T 2nn6_I            4 PDVGAIVTCKVSSINS--RFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKD----------------------------   53 (94)
T ss_dssp             CCTTCEEEEEEEEECS--SEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSC----------------------------
T ss_pred             CCCCCEEEEEEEEECC--CCEEEEEEEECCCCCCCCCCCCCCHHHCCCCCCC----------------------------
T ss_conf             8889989999989917--9889999776480157662133327520103254----------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCC
Q ss_conf             11122334443344542222334455433222234321122111211000012234444213310688857999840333
Q gi|254780751|r  109 HGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE  188 (723)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~ilVQV~ke~  188 (723)
                                                                                ...+.+.++.||.|-++|+.--
T Consensus        54 ----------------------------------------------------------~~~~~~~~~~Gd~V~~kV~~vd   75 (94)
T 2nn6_I           54 ----------------------------------------------------------KVEIYKSFRPGDIVLAKVISLG   75 (94)
T ss_dssp             ----------------------------------------------------------CCCGGGTCCSSSEEEEEEEEEE
T ss_pred             ----------------------------------------------------------CCCHHHHCCCCCEEEEEEEEEC
T ss_conf             ----------------------------------------------------------3066863679999999999863


Q ss_pred             CCCCCCCCCCCC
Q ss_conf             234564101233
Q gi|254780751|r  189 RGNKGAAVTTYL  200 (723)
Q Consensus       189 ~~~Kga~lT~~i  200 (723)
                      ...+-..||+.-
T Consensus        76 ~~~~~i~LS~k~   87 (94)
T 2nn6_I           76 DAQSNYLLTTAE   87 (94)
T ss_dssp             TTTTEEEEECCS
T ss_pred             CCCCEEEEEECC
T ss_conf             889739989628


No 22 
>>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha subunit; transferase, protein biosynthesis, protein synthesis/transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A (A:1-88)
Probab=97.58  E-value=0.00014  Score=50.43  Aligned_cols=41  Identities=17%  Similarity=0.242  Sum_probs=36.2

Q ss_pred             CCCCCEEEEEEEEECCCCCEEEEEECC--CCCCCCCHHHCCCCCC
Q ss_conf             042878798997836388231353278--9771302221371210
Q gi|254780751|r   37 QIKGNIYLAKVTRVEPSLQAAFVDYGG--NRHGFLPFLEIHPDYY   79 (723)
Q Consensus        37 ~~~GnIY~G~V~~V~p~lqAAFVdiG~--~k~gFL~~~ei~~~y~   79 (723)
                      .-.|.||.|+|++|.+.  .|||+++.  +-.||||.+|+..+|+
T Consensus        13 ~~~G~i~~g~V~~i~~~--G~~V~l~~~~gi~g~i~~s~ls~~~~   55 (88)
T 2a19_A           13 PEIDDIVMVNVQQIAEM--GAYVKLLEYDNIEGMILLSELSRRRI   55 (88)
T ss_dssp             CCTTCEEEEEEEEEETT--EEEEEETTTTTCEEEEECC-------
T ss_pred             CCCCCEEEEEEEEEECC--EEEEEECCCCCEEEEEEHHHHCCCCC
T ss_conf             99989999999999798--79999767798269988999286644


No 23 
>>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=97.49  E-value=0.0003  Score=48.21  Aligned_cols=43  Identities=26%  Similarity=0.412  Sum_probs=35.9

Q ss_pred             CCCCCCCEEEEEEEEECCCCCEEEEEECC---CCCCCCCHHHCCCCCC
Q ss_conf             46042878798997836388231353278---9771302221371210
Q gi|254780751|r   35 KKQIKGNIYLAKVTRVEPSLQAAFVDYGG---NRHGFLPFLEIHPDYY   79 (723)
Q Consensus        35 ~~~~~GnIY~G~V~~V~p~lqAAFVdiG~---~k~gFL~~~ei~~~y~   79 (723)
                      ....+|.+|.|+|++|.+.  ++||+++.   +-.||+|++|+..++|
T Consensus         8 ~~~~~G~~v~g~V~~i~~~--G~fV~l~~~~~gi~Gli~~s~ls~~~~   53 (103)
T 2eqs_A            8 EEPTIGDIYNGKVTSIMQF--GCFVQLEGLRKRWEGLVHISELRREGR   53 (103)
T ss_dssp             SSCCTTCEEEEEEEEECSS--CEEEEECSSSSCCEEEECGGGTSSSSC
T ss_pred             CCCCCCCEEEEEEEEEECC--EEEEEECCCCCCEECEECHHHEECCCC
T ss_conf             5688999999999999536--589994586431211001523003334


No 24 
>>1yz6_A Probable translation initiation factor 2 alpha subunit; beta barrel, helical domain and alpha beta domain; 3.37A {Pyrococcus abyssi} (A:1-83)
Probab=97.49  E-value=0.00031  Score=48.11  Aligned_cols=43  Identities=19%  Similarity=0.413  Sum_probs=36.9

Q ss_pred             CCCCCCEEEEEEEEECCCCCEEEEEECC--CCCCCCCHHHCCCCCCC
Q ss_conf             6042878798997836388231353278--97713022213712102
Q gi|254780751|r   36 KQIKGNIYLAKVTRVEPSLQAAFVDYGG--NRHGFLPFLEIHPDYYQ   80 (723)
Q Consensus        36 ~~~~GnIY~G~V~~V~p~lqAAFVdiG~--~k~gFL~~~ei~~~y~~   80 (723)
                      ....|.||.|+|++|.+  .+|||+||.  +..||+|.+|+..+|+.
T Consensus         7 ~~~~G~~v~g~V~~i~~--~G~fV~l~~~~gv~Gli~~~~~s~~~~~   51 (83)
T 1yz6_A            7 YPEEGEFVVATVKRIHN--YGAFLELDEYPGKEAFMHISEVASTWVR   51 (83)
T ss_dssp             SCCTTCEEEEEEEEEET--TEEEEEETTSTTCEEEEEGGGTSSSCCS
T ss_pred             CCCCCCEEEEEEEEEEC--CEEEEEECCCCCCEEEEEHHHCCCCCCC
T ss_conf             79999999999999972--4389997478992899898887774204


No 25 
>>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} (A:642-785)
Probab=97.46  E-value=5.6e-05  Score=53.26  Aligned_cols=87  Identities=21%  Similarity=0.233  Sum_probs=68.8

Q ss_pred             CCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             46042878798997836388231353278977130222137121028988999999988863111110000000111223
Q gi|254780751|r   35 KKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTI  114 (723)
Q Consensus        35 ~~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  114 (723)
                      ....+|.||.|+|++|.|.  +|||++|.+-.||+|.+|+..+|..                                  
T Consensus         9 ~~~~~G~iv~G~V~~v~~~--G~fV~l~~~i~Glv~~sels~~~~~----------------------------------   52 (144)
T 3bzc_A            9 KDLKPGMVLEGVVTNVTNF--GAFVDIGVHQDGLVHISALSEKFVK----------------------------------   52 (144)
T ss_dssp             TTCCTTCBCCCEEEEEETT--EEEEECSSSSEEEEETTTSCSSCCS----------------------------------
T ss_pred             HCCCCCCEEEEEEEEECCC--CEEEEECCCCCEEEEHHHCCCCCCC----------------------------------
T ss_conf             3089998899999987578--5699806997216778854777789----------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCC
Q ss_conf             34443344542222334455433222234321122111211000012234444213310688857999840333234564
Q gi|254780751|r  115 PNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGA  194 (723)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~ilVQV~ke~~~~Kga  194 (723)
                                                                            ...+.++.||.|-|.|++--..+.-.
T Consensus        53 ------------------------------------------------------~~~~~~~~G~~v~vkV~~vd~~~~~i   78 (144)
T 3bzc_A           53 ------------------------------------------------------DPYEVVKAGDIVKVKVMEVDIPRNRV   78 (144)
T ss_dssp             ------------------------------------------------------CHHHHCCTTCCCCCBEEEEETTTTEE
T ss_pred             ------------------------------------------------------CHHHCCCCCCEEEEEEEEEECCCCEE
T ss_conf             ------------------------------------------------------98884999998999999986467889


Q ss_pred             CCCCCCCCCCCCEEECC
Q ss_conf             10123345765234422
Q gi|254780751|r  195 AVTTYLSLAGRYSVLMP  211 (723)
Q Consensus       195 ~lT~~isl~Gry~Vl~P  211 (723)
                      .||..-+.........+
T Consensus        79 ~LS~~~~~~~~~~~~~~   95 (144)
T 3bzc_A           79 GLSMRMSDTPGEKVEGQ   95 (144)
T ss_dssp             EECCSSCCCCC------
T ss_pred             EEEECCCCCCCCCCCCC
T ss_conf             98842666666666677


No 26 
>>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A (A:151-239,A:464-723)
Probab=97.45  E-value=2.1e-05  Score=56.18  Aligned_cols=42  Identities=31%  Similarity=0.498  Sum_probs=32.1

Q ss_pred             CCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCC
Q ss_conf             60428787989978363882313532789771302221371210
Q gi|254780751|r   36 KQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYY   79 (723)
Q Consensus        36 ~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~   79 (723)
                      ...+|.||.|+|++|.|  ..|||+++.+..||||.+++..+++
T Consensus       250 ~~~vG~i~~g~V~~I~~--fGaFV~l~~g~~GlihiSel~~~rv  291 (349)
T 3cdi_A          250 EIEVGRVYTGKVTRIVD--FGAFVAIGGGKEGLVHISQIADKRV  291 (349)
T ss_dssp             --------------------------------------------
T ss_pred             CCCCCCEEEEEEEEEEE--EEEEEEECCCCCEEEEEECCCCCCC
T ss_conf             77669889999999994--3299996699944787020467565


No 27 
>>1kl9_A Eukaryotic translation initiation factor 2 subunit 1; OB fold, helical domain; 1.90A {Homo sapiens} (A:1-88)
Probab=97.42  E-value=0.00039  Score=47.39  Aligned_cols=42  Identities=14%  Similarity=0.160  Sum_probs=35.9

Q ss_pred             CCCCCCEEEEEEEEECCCCCEEEEEECC--CCCCCCCHHHCCCCCC
Q ss_conf             6042878798997836388231353278--9771302221371210
Q gi|254780751|r   36 KQIKGNIYLAKVTRVEPSLQAAFVDYGG--NRHGFLPFLEIHPDYY   79 (723)
Q Consensus        36 ~~~~GnIY~G~V~~V~p~lqAAFVdiG~--~k~gFL~~~ei~~~y~   79 (723)
                      ....|.+|.|+|++|.+.  ++||+++.  +-.||+|++++..+|+
T Consensus        12 ~~~~G~vv~g~V~~v~~~--G~~V~l~~~~gi~G~i~~~els~~~~   55 (88)
T 1kl9_A           12 FPEVEDVVXVNVRSIAEX--GAYVSLLEYNNIEGXILLSELSRRRI   55 (88)
T ss_dssp             SCCTTCEEEEEEEEECSS--EEEEEETTTTTEEEEEEGGGC-----
T ss_pred             CCCCCCEEEEEEEEEECC--EEEEEECCCCCEEEEEEHHHHCCCCC
T ss_conf             899999999999999666--68999756899089989999088865


No 28 
>>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} (B:83-171)
Probab=97.42  E-value=0.00035  Score=47.75  Aligned_cols=41  Identities=17%  Similarity=0.091  Sum_probs=35.9

Q ss_pred             CCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCCCC
Q ss_conf             28787989978363882313532789771302221371210289
Q gi|254780751|r   39 KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIP   82 (723)
Q Consensus        39 ~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~ip   82 (723)
                      +|.||.|+|++|.|.  +|||++| +-.||+|.+++.++|...|
T Consensus         1 kG~i~~g~V~~v~~~--G~FV~l~-~~eg~v~~s~l~~d~~~~~   41 (89)
T 1y14_B            1 KGEVVDGTVVSCSQH--GFEVQVG-PMKVFVTKHLMPQDLTFNA   41 (89)
T ss_dssp             TTCEEEEEEEEEETT--EEEEEET-TEEEEEEGGGSCTTCEECC
T ss_pred             CCCEEEEEEEEEECC--CEEEEEC-CCCEEEEEEECCCCCCCCH
T ss_conf             797899999998157--3899905-6217877320033211475


No 29 
>>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli K12} (A:559-644)
Probab=97.39  E-value=0.00036  Score=47.63  Aligned_cols=40  Identities=13%  Similarity=0.190  Sum_probs=36.2

Q ss_pred             CCCEEEEEEEEECCCCCEEEEEE-CCCCCCCCCHHHCCCCCCC
Q ss_conf             28787989978363882313532-7897713022213712102
Q gi|254780751|r   39 KGNIYLAKVTRVEPSLQAAFVDY-GGNRHGFLPFLEIHPDYYQ   80 (723)
Q Consensus        39 ~GnIY~G~V~~V~p~lqAAFVdi-G~~k~gFL~~~ei~~~y~~   80 (723)
                      .|.+|-|+|++|.|.  ++||++ +.+..||+|++++..+||.
T Consensus         2 ~G~~~~g~V~~I~~~--G~fV~l~~~~~eGli~~s~l~~~~~~   42 (86)
T 2id0_A            2 TDTRFAAEIVDISRG--GXRVRLVDNGAIAFIPAPFLHAVRDE   42 (86)
T ss_dssp             SCCCEEEEEEEEETT--EEEEEETTTCCEEEEEGGGTCSCGGG
T ss_pred             CCCEEEEEEEEEEEC--CEEEEEECCCEEEEEEHHHCCCCCCE
T ss_conf             973489999889706--39999826964999985664777644


No 30 
>>2waq_E DNA-directed RNA polymerase RPO7 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_E 2pmz_E 3hkz_E (E:81-180)
Probab=97.33  E-value=0.00032  Score=47.98  Aligned_cols=39  Identities=21%  Similarity=0.342  Sum_probs=35.6

Q ss_pred             CCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCC
Q ss_conf             287879899783638823135327897713022213712102
Q gi|254780751|r   39 KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQ   80 (723)
Q Consensus        39 ~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~   80 (723)
                      +|.+|.|+|++|.|.  ++||+++ +..||+|.+++..+||.
T Consensus         1 VG~~~~g~V~~v~~~--G~fV~l~-~~~Glv~~s~ls~~~~~   39 (100)
T 2waq_E            1 VQEVVEGEVLQVDNY--GIFVNLG-PMDGLVHISQITDDTLK   39 (100)
T ss_dssp             SSCCCCEEEEEECSS--EEEEBCS-SSBBCEESTTBCSSSSC
T ss_pred             CCCEEEEEEEEEECC--EEEEEEC-CCCCEEEEHHHCCCCCC
T ss_conf             782999999998547--1999714-87753975232787420


No 31 
>>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} (A:1-86)
Probab=97.30  E-value=0.00087  Score=44.97  Aligned_cols=42  Identities=14%  Similarity=0.207  Sum_probs=36.6

Q ss_pred             CCCCCCEEEEEEEEECCCCCEEEEEECC--CCCCCCCHHHCCCCCC
Q ss_conf             6042878798997836388231353278--9771302221371210
Q gi|254780751|r   36 KQIKGNIYLAKVTRVEPSLQAAFVDYGG--NRHGFLPFLEIHPDYY   79 (723)
Q Consensus        36 ~~~~GnIY~G~V~~V~p~lqAAFVdiG~--~k~gFL~~~ei~~~y~   79 (723)
                      ....|.+|.|+|.+|.+.  .|||+++.  +-.||||++|+..+|+
T Consensus        10 ~~~~G~vv~g~V~~i~~~--G~~V~l~~~~gi~g~i~~~eis~~~~   53 (86)
T 1q8k_A           10 FPEVEDVVMVNVRSIQEM--GAYVSLLEYNNIEGMIHLSELSRRRI   53 (86)
T ss_dssp             CCSSCCEEEEEEEEEETT--EEEEESCTTTSCCEEECGGGTSCSSC
T ss_pred             CCCCCCEEEEEEEEEECC--EEEEEECCCCCEEEEEEHHHCCCCCC
T ss_conf             899999999999999735--49999707998189999898778544


No 32 
>>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} (P:129-215)
Probab=97.26  E-value=0.00069  Score=45.68  Aligned_cols=39  Identities=31%  Similarity=0.319  Sum_probs=33.5

Q ss_pred             CCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCC
Q ss_conf             604287879899783638823135327897713022213712
Q gi|254780751|r   36 KQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD   77 (723)
Q Consensus        36 ~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~   77 (723)
                      ....|.|+.|+|.++.+.  +||||+| +-.||||.+++.|.
T Consensus         3 ~~~~G~iv~g~V~~i~~~--G~~V~l~-~~~g~ip~~e~~~~   41 (87)
T 1hh2_P            3 SELKGTVTTAEVIRVMGE--WADIRIG-KLETRLPKKEWIPG   41 (87)
T ss_dssp             TCCTTCEEEEEEEEECSS--EEEEEET-TEEEEEEGGGSCTT
T ss_pred             HHHCCCEEEEEEEEEECC--CEEEECC-CEEEEECHHHCCCC
T ss_conf             862681899999999614--3599618-61687177886986


No 33 
>>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} (G:83-215)
Probab=97.12  E-value=0.0011  Score=44.31  Aligned_cols=84  Identities=13%  Similarity=-0.001  Sum_probs=60.7

Q ss_pred             CCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             28787989978363882313532789771302221371210289889999999888631111100000001112233444
Q gi|254780751|r   39 KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDH  118 (723)
Q Consensus        39 ~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (723)
                      .|.+|.|+|++|.+.  ++||+++ +-.||||++++..+|...+.                                   
T Consensus         1 eG~~~~G~V~~i~~~--G~fV~l~-~~~Gli~~s~l~~~~~~d~~-----------------------------------   42 (133)
T 2b8k_G            1 KGEVVDGTVVSCSQH--GFEVQVG-PMKVFVTKHLMPQDLTFNAG-----------------------------------   42 (133)
T ss_dssp             TTEEEEEEEEEEETT--EEEEECT-TSEEEEEGGGSCSSCCCBSS-----------------------------------
T ss_pred             CCEEEEEEEEEECCC--EEEEEEC-CCEEEEEEEECCCCCCCCCC-----------------------------------
T ss_conf             880999999976266--4899820-71689661006775421600-----------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf             33445422223344554332222343211221112110000122344442133106888579998403332345641012
Q gi|254780751|r  119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT  198 (723)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~ilVQV~ke~~~~Kga~lT~  198 (723)
                                                                 ..........+.++.||.|-|+|.+--...+-..|+.
T Consensus        43 -------------------------------------------~~~~~~~~~~~~~~~G~~v~vkVl~vd~~~~~i~ls~   79 (133)
T 2b8k_G           43 -------------------------------------------SNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHAIG   79 (133)
T ss_dssp             -------------------------------------------CSSCEEECSSCEEETTCEEEEEEEEEEEETTEEEEEE
T ss_pred             -------------------------------------------CCEEEEECCCCEEECCCEEEEEEEEEECCCCEEEEEE
T ss_conf             -------------------------------------------0527894388299379999999999862657048999


Q ss_pred             CCCCC
Q ss_conf             33457
Q gi|254780751|r  199 YLSLA  203 (723)
Q Consensus       199 ~isl~  203 (723)
                      .....
T Consensus        80 k~~~~   84 (133)
T 2b8k_G           80 SIKED   84 (133)
T ss_dssp             ECCST
T ss_pred             EECCC
T ss_conf             96789


No 34 
>>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} (G:84-172)
Probab=97.10  E-value=0.00058  Score=46.20  Aligned_cols=39  Identities=26%  Similarity=0.307  Sum_probs=35.0

Q ss_pred             CCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCC
Q ss_conf             287879899783638823135327897713022213712102
Q gi|254780751|r   39 KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQ   80 (723)
Q Consensus        39 ~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~   80 (723)
                      +|+||.|+|++|.+.  +|||++| +-.||+|.+++.++|..
T Consensus         1 kG~i~~G~V~~i~~~--G~FV~l~-~~eG~v~~s~l~~d~~~   39 (89)
T 3h0g_G            1 RGEVVDAIVTTVNKM--GFFANIG-PLNVFVSSHLVPPDMKF   39 (89)
T ss_dssp             TTCEEECCCCEEETT--EEECCBT-TBCCEEEGGGSCTTCCC
T ss_pred             CCCEEEEEEEEEECC--EEEEEEE-CCCEEEEHHHCCCCCCC
T ss_conf             898999999688055--5999940-64157441211554311


No 35 
>>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} (A:592-757)
Probab=97.04  E-value=0.00016  Score=50.10  Aligned_cols=42  Identities=21%  Similarity=0.200  Sum_probs=37.4

Q ss_pred             CCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCC
Q ss_conf             60428787989978363882313532789771302221371210
Q gi|254780751|r   36 KQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYY   79 (723)
Q Consensus        36 ~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~   79 (723)
                      ....|.||.|.|..+.+.  +|||+++.+..||+|+++|..+|+
T Consensus        73 ~~~~g~i~~g~V~~i~~~--G~fv~~~~~~~g~i~is~i~~~~~  114 (166)
T 1e3p_A           73 SPEVGERILGSVVKTTTF--GAFVSLLPGKDGLLHISQIRKLAG  114 (166)
T ss_dssp             ---------CBEEECC-C--SCEECCC---CCCCC---------
T ss_pred             CCCCCCEEEEEEEEEEEC--EEEEEECCCCCEEEEEECCCCCCC
T ss_conf             356798899999999825--199996699952788322366544


No 36 
>>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae} (B:81-218)
Probab=97.03  E-value=0.0024  Score=41.91  Aligned_cols=91  Identities=13%  Similarity=0.065  Sum_probs=61.5

Q ss_pred             CCCEEEEEEEEECCCCCEEEEEE-CCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             28787989978363882313532-78977130222137121028988999999988863111110000000111223344
Q gi|254780751|r   39 KGNIYLAKVTRVEPSLQAAFVDY-GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPND  117 (723)
Q Consensus        39 ~GnIY~G~V~~V~p~lqAAFVdi-G~~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (723)
                      +|.||.|+|++|.+  ..+||++ |....||+|.+++..+|+.-|..                                 
T Consensus         1 VGei~~G~V~~v~~--~GifV~L~~~~~egli~~s~L~d~~~~~~~~---------------------------------   45 (138)
T 2ckz_B            1 LGEIVTGWISKCTA--EGIKVSLLGIFDDIFIPQNMLFEGCYYTPEE---------------------------------   45 (138)
T ss_dssp             TTCEEEEEEEEEET--TEEEEECTTSCCCEEEETTTSCTTCEEETTT---------------------------------
T ss_pred             CCCEEEEEEEEECC--CEEEEEECCCCCCEEEEHHHCCCCCEECHHC---------------------------------
T ss_conf             78599999971516--5499993387365385077678985793112---------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf             43344542222334455433222234321122111211000012234444213310688857999840333234564101
Q gi|254780751|r  118 HSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVT  197 (723)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~ilVQV~ke~~~~Kga~lT  197 (723)
                                                                ..............++.||.|-|+|..--..+.-..|+
T Consensus        46 ------------------------------------------~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~ls   83 (138)
T 2ckz_B           46 ------------------------------------------SAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSP   83 (138)
T ss_dssp             ------------------------------------------TEEEEECC--CEEEECTTCEEEEEEEEEEECCCCC---
T ss_pred             ------------------------------------------CEEEEECCCCCCEEECCCCEEEEEEEEEEEECCCCCCC
T ss_conf             ------------------------------------------55997248745609758998999999999642799873


Q ss_pred             CCCCCCCCC
Q ss_conf             233457652
Q gi|254780751|r  198 TYLSLAGRY  206 (723)
Q Consensus       198 ~~isl~Gry  206 (723)
                      ..=......
T Consensus        84 l~~~~~~~~   92 (138)
T 2ckz_B           84 KERELEERA   92 (138)
T ss_dssp             ---------
T ss_pred             CCCCCCCCC
T ss_conf             100123223


No 37 
>>2ba1_A Archaeal exosome RNA binding protein CSL4; RNAse PH, RNA degradation, exoribonuclease, RNA binding, S1 domain, Zn-ribbon, phosphorolytic; 2.70A {Archaeoglobus fulgidus} (A:54-145)
Probab=96.93  E-value=0.0023  Score=42.08  Aligned_cols=40  Identities=23%  Similarity=0.470  Sum_probs=33.9

Q ss_pred             CCCCEEEEEEEEECCCCCEEEEEEC----------CCCCCCCCHHHCCCCCC
Q ss_conf             4287879899783638823135327----------89771302221371210
Q gi|254780751|r   38 IKGNIYLAKVTRVEPSLQAAFVDYG----------GNRHGFLPFLEIHPDYY   79 (723)
Q Consensus        38 ~~GnIY~G~V~~V~p~lqAAFVdiG----------~~k~gFL~~~ei~~~y~   79 (723)
                      .+|.+|.|+|++|.+-  .|||++.          .+..||+|.+++...+.
T Consensus         3 ~vG~~v~G~V~~I~~f--G~fVel~~~~~~~~~~~~~~~gli~~s~~s~~~~   52 (92)
T 2ba1_A            3 VKGDVVLGRVVDLRNS--IALIEVSSKKGENRGPSNRGIGILHVSNVDEGYV   52 (92)
T ss_dssp             CTTCEEEEEEEEEETT--EEEEEEEEETTCCSCCTTCEEEEEEHHHHCSSCC
T ss_pred             CCCCEEEEEEEEECCC--CEEEEEEECCCCCCCCCCCCCCEEEECCCCHHHH
T ss_conf             7899999999896168--3899997125863555545523068423315666


No 38 
>>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} (B:81-172)
Probab=96.92  E-value=0.0015  Score=43.36  Aligned_cols=38  Identities=26%  Similarity=0.330  Sum_probs=34.0

Q ss_pred             CCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCC
Q ss_conf             28787989978363882313532789771302221371210
Q gi|254780751|r   39 KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYY   79 (723)
Q Consensus        39 ~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~   79 (723)
                      +|.||.|+|++|.+  .++||++| +-.||+|.+++..+|.
T Consensus         1 kG~i~~G~V~~v~~--~G~FV~l~-~~eGli~~s~l~~~~~   38 (92)
T 2c35_B            1 KGEVVDAVVTQVNK--VGLFTEIG-PMSCFISRHSIPSEME   38 (92)
T ss_dssp             TTCEEEEEEEEEET--TEEEEEET-TEEEEEEGGGSCTTEE
T ss_pred             CCEEEEEEEEEECC--CEEEEEEE-CCCEEECCHHCCCEEE
T ss_conf             63599999998727--86999960-6311201011023032


No 39 
>>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus WR} (A:)
Probab=96.56  E-value=0.003  Score=41.21  Aligned_cols=42  Identities=10%  Similarity=-0.013  Sum_probs=34.6

Q ss_pred             CCCCCCCEEEEEEEEECCCCCEEEEEECC--CCCCCCCHHHCCCCCC
Q ss_conf             46042878798997836388231353278--9771302221371210
Q gi|254780751|r   35 KKQIKGNIYLAKVTRVEPSLQAAFVDYGG--NRHGFLPFLEIHPDYY   79 (723)
Q Consensus        35 ~~~~~GnIY~G~V~~V~p~lqAAFVdiG~--~k~gFL~~~ei~~~y~   79 (723)
                      .....|.|+.|+|+-..   .+|||.++.  +..||+|.+++.++|.
T Consensus         7 ~~~~~G~iv~g~V~v~~---~G~fV~l~~~~gv~Gli~~s~is~~~~   50 (88)
T 1luz_A            7 SLPNAGDVIKGRVYEKD---YALYIYLFDYPHFEAILAESVKXHXDR   50 (88)
T ss_dssp             CCCCTTCEEEEEEEEET---TEEEEEETTCTTSEEEEGGGSSCCHHH
T ss_pred             ECCCCCCEEEEEEEEEC---CEEEEEECCCCCCEEEEEEHHHHHHHH
T ss_conf             06987721324899968---899999368898238877343551589


No 40 
>>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae TIGR4} (A:136-219)
Probab=96.50  E-value=0.0088  Score=37.97  Aligned_cols=39  Identities=26%  Similarity=0.255  Sum_probs=32.6

Q ss_pred             CCCCCCEEEEEEEEECCCCCEEEEEECCCC-CCCCCHHHCCC
Q ss_conf             604287879899783638823135327897-71302221371
Q gi|254780751|r   36 KQIKGNIYLAKVTRVEPSLQAAFVDYGGNR-HGFLPFLEIHP   76 (723)
Q Consensus        36 ~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k-~gFL~~~ei~~   76 (723)
                      ....|.+|.|+|++|.|.  ++||++.... .||||.+|+..
T Consensus        14 ~~~~G~~~~g~V~~i~~~--G~fV~l~~~~~eGlv~~sel~~   53 (84)
T 3go5_A           14 NNXQNQNWPAIVYRLKLS--GTFVYLPENNXLGFIHPSERYA   53 (84)
T ss_dssp             SCCTTCEEEEEEEEEETT--EEEEEETTTTEEEEECGGGCSS
T ss_pred             HCCCCCEEEEEEEEEECC--CCEEEECCCCEEEEECCCCCCC
T ss_conf             325999999999999748--7189843787899963541244


No 41 
>>1a6f_A RNAse P protein, ribonuclease P protein; endonuclease, subunit; 2.60A {Bacillus subtilis} (A:)
Probab=87.79  E-value=0.79  Score=24.39  Aligned_cols=75  Identities=27%  Similarity=0.278  Sum_probs=53.4

Q ss_pred             CCCCEEEC--CCC-----CCCCEEEECCCCHHHHHHHHHHHHHHH-------CCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             76523442--278-----875124204688689999999998630-------0258716998504557579999999999
Q gi|254780751|r  203 AGRYSVLM--PNT-----SKGETISRKITNPVDRKNLKEIARGLE-------VPAGMGVILRTAGASRTKIEIKRDFEYL  268 (723)
Q Consensus       203 ~Gry~Vl~--P~~-----~~~~~iSrki~~~~~r~~l~~~~~~~~-------~~~~~G~IiRT~a~~~~~~~l~~d~~~L  268 (723)
                      .|.|+++.  |+.     --|+.+|+|+...-.|.+.+..+.+..       .+.++-+|+|..+...+..++..|+..|
T Consensus        27 ~~~~~~l~~~~~~~~~~~R~gi~vsKKvg~AV~RNriKR~lRe~~R~~~~~l~~~d~v~i~r~~~~~~~~~~l~~~l~~l  106 (119)
T 1a6f_A           27 ANRQFVLYTLDQPENDELRVGLSVSKKIGNAVMRNRIKRLIRQAFLEEKERLKEKDYIIIARKPASQLTYEETKKSLQHL  106 (119)
T ss_dssp             ECSSEEEEECCCTTCSSCEEEEEECSTTCCHHHHHHHHHHHHHHHHHHTTTBCSSEEEEEECGGGTTCCHHHHHHHHHHH
T ss_pred             ECCCEEEEEECCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf             48978999973898998269999931025568889999999999998641289974999966876769999999999999


Q ss_pred             HHHHHHHHH
Q ss_conf             999998776
Q gi|254780751|r  269 MRLWDNVRE  277 (723)
Q Consensus       269 ~~~w~~i~~  277 (723)
                      ++.+..+..
T Consensus       107 l~k~~~~~~  115 (119)
T 1a6f_A          107 FRKSSLYKK  115 (119)
T ss_dssp             HHHTTCBC-
T ss_pred             HHHHHHHHC
T ss_conf             998242311


No 42 
>>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} (A:1-81)
Probab=87.69  E-value=0.81  Score=24.35  Aligned_cols=39  Identities=21%  Similarity=0.271  Sum_probs=31.0

Q ss_pred             CCCCCCEEEEEEEEECCCC--CEEEEEECCC---CCCCCCHHHC
Q ss_conf             6042878798997836388--2313532789---7713022213
Q gi|254780751|r   36 KQIKGNIYLAKVTRVEPSL--QAAFVDYGGN---RHGFLPFLEI   74 (723)
Q Consensus        36 ~~~~GnIY~G~V~~V~p~l--qAAFVdiG~~---k~gFL~~~ei   74 (723)
                      ....|.|--|.|.++.+.=  -..+||+|.+   -.|+||-+|.
T Consensus         4 ~~~~geivtg~V~r~~~~~~~~~v~v~lg~~~~~~EaiLp~~eq   47 (81)
T 2asb_A            4 STREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQ   47 (81)
T ss_dssp             CCCTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGS
T ss_pred             CCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCEEEECCHHHC
T ss_conf             11279589999999805897258999868877660695897886


No 43 
>>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, alternative splicing, hydrolase; HET: NAG BMA MAN; 2.00A {Homo sapiens} (A:48-194)
Probab=86.44  E-value=0.74  Score=24.62  Aligned_cols=61  Identities=15%  Similarity=0.269  Sum_probs=40.1

Q ss_pred             CCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHCCCCEEEEECCCCCCHH----HHHHHHHHHHHHHH
Q ss_conf             544455511479999999-99999998731036863896033479888----89999999999731
Q gi|254780751|r  388 RSTREHCIEDTALQTNLE-AAEEIARQLRLRDLAGLIVVDFIDMEEKK----NNRSVEKKLKESLK  448 (723)
Q Consensus       388 ~~~~~~~~e~t~l~tNle-AA~EIaRQlRLRnlgGiIvIDFIdM~~~~----~~~~v~~~l~~~l~  448 (723)
                      ..+-++=.....|...|+ |.+.|.+.|.-+|-+||-||||=.=+.-=    ..+.|++.....|-
T Consensus        24 ~~~NGGiPQ~g~L~~HL~k~~~dI~~~ip~~~f~GLaVIDwE~WRP~w~rNw~~k~iYr~~S~~lv   89 (147)
T 2pe4_A           24 EPVFGGLPQNASLIAHLARTFQDILAAIPAPDFSGLAVIDWEAWRPRWAFNWDTKDIYRQRSRALV   89 (147)
T ss_dssp             CEETTSSGGGSCHHHHHHHHHHHHHHHCCCTTCCSEEEECCCSSCSSGGGCCGGGHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHCCCCCHHHHHHHHHHH
T ss_conf             851588898577999999999889975779999841798764636653433776388999999999


No 44 
>>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* (A:143-168,A:257-300)
Probab=86.22  E-value=0.36  Score=26.78  Aligned_cols=36  Identities=19%  Similarity=0.339  Sum_probs=26.4

Q ss_pred             HCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCC
Q ss_conf             002367546537860611468998878899973036
Q gi|254780751|r  480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT  515 (723)
Q Consensus       480 ~~~~c~~c~g~g~~~~~~~~~~~~~r~i~~~~~~~~  515 (723)
                      -+-.||.|+|.|.+...+.-.+-|+..|++......
T Consensus         5 ~~g~cp~c~g~g~~~~~~~~~~Gvi~~Ler~y~et~   40 (70)
T 2vf7_A            5 PEGACPECHGLGRVYTVTEDSMSARRHVLHTFANTE   40 (70)
T ss_dssp             TTTBCTTTTSSSEEEECCHHHHCHHHHHHHHHHHCC
T ss_pred             CCCCCCCCCCCCCEEEECHHHEHHHHHHHHHHHCCC
T ss_conf             111184258885355537655456678998761125


No 45 
>>1fcq_A Hyaluronoglucosaminidase; 7-stranded (beta/alpha) TIM barrel, glycosidase family 56, allergen, hydrolase; 1.60A {Apis mellifera} (A:35-193)
Probab=83.81  E-value=1.1  Score=23.43  Aligned_cols=56  Identities=18%  Similarity=0.199  Sum_probs=39.2

Q ss_pred             CCHHHHHHHHHHHHHH-HHHHHHHHCCCCEEEEECCCCCCHH----HHHHHHHHHHHHHHH
Q ss_conf             5114799999999999-9998731036863896033479888----899999999997312
Q gi|254780751|r  394 CIEDTALQTNLEAAEE-IARQLRLRDLAGLIVVDFIDMEEKK----NNRSVEKKLKESLKK  449 (723)
Q Consensus       394 ~~e~t~l~tNleAA~E-IaRQlRLRnlgGiIvIDFIdM~~~~----~~~~v~~~l~~~l~~  449 (723)
                      =.....|...|+.|++ |.+.|.-+|.+||-||||=.=+.-=    +.+.|++.+...|-+
T Consensus        44 iPQ~~~L~~HL~k~~~dI~~~ip~~~f~GLaVIDwE~WRP~w~rNw~~k~iYr~~S~elv~  104 (159)
T 1fcq_A           44 VPQLGNLTKHLQVFRDHLINQIPDKSFPGVGVIDFESWRPIFRQNWASLQPYKKLSVEVVR  104 (159)
T ss_dssp             SGGGCCHHHHHHHHHHHHHHHCCCTTCCSEEEEECCSCCSSGGGCCGGGHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHCCCCCHHHHHHHHHHHH
T ss_conf             7871669999999999899848898998537987556366444337763899999999999


No 46 
>>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa} (A:)
Probab=83.47  E-value=1.4  Score=22.79  Aligned_cols=56  Identities=16%  Similarity=0.211  Sum_probs=44.6

Q ss_pred             CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEE
Q ss_conf             02367546537860611468998878899973036431013576999998730237999999998488799984
Q gi|254780751|r  481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI  554 (723)
Q Consensus       481 ~~~c~~c~g~g~~~~~~~~~~~~~r~i~~~~~~~~~~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~  554 (723)
                      .-.||+|.|.-.--|.-.+|..+.+.|++....+.+                  +..-+..|..+||-.|...+
T Consensus        26 ~lRC~~Cqnqsi~dSna~~A~dmR~~i~~~i~~G~s------------------d~eI~~~lv~RYG~~Vl~~P   81 (84)
T 2hl7_A           26 ELRCPKCQNQDIADSNAPIAADLRKQIYGQLQQGKS------------------DGEIVDYMVARYGDFVRYKP   81 (84)
T ss_dssp             HEECTTSSSCBTTTCCSHHHHHHHHHHHHHHHHTCC------------------HHHHHHHHHHHHTTTCEECC
T ss_pred             HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC------------------HHHHHHHHHHHCCCEEEEEC
T ss_conf             378887699683006778899999999999995999------------------89999999997088386319


No 47 
>>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} (A:113-204)
Probab=82.07  E-value=3  Score=20.39  Aligned_cols=39  Identities=21%  Similarity=0.261  Sum_probs=29.7

Q ss_pred             CCCCCCEEEEEEEEECCCC--CEEEEEECC---CCCCCCCHHHC
Q ss_conf             6042878798997836388--231353278---97713022213
Q gi|254780751|r   36 KQIKGNIYLAKVTRVEPSL--QAAFVDYGG---NRHGFLPFLEI   74 (723)
Q Consensus        36 ~~~~GnIY~G~V~~V~p~l--qAAFVdiG~---~k~gFL~~~ei   74 (723)
                      ....|.|--|.|.++.+.-  -..+||+|.   +-.|+||-+|.
T Consensus        15 ~~~~geiVtg~V~r~~~~~~~~~v~~~L~~~~~~~ea~Lp~~eq   58 (92)
T 1k0r_A           15 STREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQ   58 (92)
T ss_dssp             CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGS
T ss_pred             HHHCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCEEECCHHHC
T ss_conf             87439778899999736886159999737767564594687775


No 48 
>>2atm_A Hyaluronoglucosaminidase; beta-alpha-barrels, hydrolase; HET: MES; 2.00A {Vespula vulgaris} (A:31-183)
Probab=81.38  E-value=1.5  Score=22.41  Aligned_cols=61  Identities=15%  Similarity=0.213  Sum_probs=38.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHCCCCEEEEECCCCCCHH----HHHHHHHHHHHHH
Q ss_conf             5544455511479999999999-99998731036863896033479888----8999999999973
Q gi|254780751|r  387 GRSTREHCIEDTALQTNLEAAE-EIARQLRLRDLAGLIVVDFIDMEEKK----NNRSVEKKLKESL  447 (723)
Q Consensus       387 G~~~~~~~~e~t~l~tNleAA~-EIaRQlRLRnlgGiIvIDFIdM~~~~----~~~~v~~~l~~~l  447 (723)
                      |...-++=.....|...|+.|+ .|...|.-.|-+||-||||=.=+.-=    +.+.|++.+...|
T Consensus        37 g~~~nGGiPQ~~~L~~HL~k~~~dI~~~ip~~~f~GLaVIDwE~WRP~w~rNw~~k~iYr~~S~el  102 (153)
T 2atm_A           37 YKKRNGGVPQEGNITIHLQKFIENLDKIYPNRNFSGIGVIDFERWRPIFRQNWGNMKIHKNFSIDL  102 (153)
T ss_dssp             EEEETTSSGGGCCHHHHHHHHHHHHHHHCCCTTCCSEEEEECCSCCSSGGGCCGGGTHHHHHHHHH
T ss_pred             CCEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHCCCCCHHHHHHHHHH
T ss_conf             431058859757699999999998998577988884279874342653554266408899999999


No 49 
>>1d6t_A Ribonuclease P, RNAse P protein; endonuclease, subunit; NMR {Staphylococcus aureus} (A:)
Probab=80.92  E-value=2.2  Score=21.33  Aligned_cols=75  Identities=24%  Similarity=0.323  Sum_probs=53.1

Q ss_pred             CCCCCEEEC--CCC-----CCCCEEEECCCCHHHHHHHHHHHHHHH-------CCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             576523442--278-----875124204688689999999998630-------025871699850455757999999999
Q gi|254780751|r  202 LAGRYSVLM--PNT-----SKGETISRKITNPVDRKNLKEIARGLE-------VPAGMGVILRTAGASRTKIEIKRDFEY  267 (723)
Q Consensus       202 l~Gry~Vl~--P~~-----~~~~~iSrki~~~~~r~~l~~~~~~~~-------~~~~~G~IiRT~a~~~~~~~l~~d~~~  267 (723)
                      +.|+|+++.  |+.     --|+.+|+|+...-.|.+.+..+.+..       .+.++-+|++..+..++..++..|+..
T Consensus        25 ~~~~~~~l~~~~~~~~~~~Rvgi~vsKKvg~AV~RNriKR~lRe~~R~~~~~l~~~d~vii~~~~~~~~~~~~l~~~l~~  104 (117)
T 1d6t_A           25 VANRQFVVYTCNNKEIDHFRLGISVSKKLGNAVLRNKIKRAIRENFKVHKSHILAKDIIVIARQPAKDMTTLQIQNSLEH  104 (117)
T ss_dssp             CCSSSEECEECSTTCCSSCCEEEECCSSSCSTTHHHHHHHHHHHHHHHGGGTCCSSCEEEEECSGGGGCCTTHHHHHHTT
T ss_pred             EECCCEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf             75897899997189888856999993356554788999999999999710248996499997577565999999999999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999877
Q gi|254780751|r  268 LMRLWDNVR  276 (723)
Q Consensus       268 L~~~w~~i~  276 (723)
                      |+..+....
T Consensus       105 ll~k~~~~~  113 (117)
T 1d6t_A          105 VLKIAKVFN  113 (117)
T ss_dssp             HHHHHTCSS
T ss_pred             HHHHHHHHH
T ss_conf             999976666


No 50 
>>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibitory protein; transcription regulation, Trp RNA-binding attenuation protein; 2.8A {Bacillus subtilis} PDB: 2zp8_E* 2zp9_C* (A:)
Probab=73.46  E-value=1.4  Score=22.62  Aligned_cols=24  Identities=29%  Similarity=0.540  Sum_probs=16.9

Q ss_pred             HHHCCCCCCCCCEEEEECCHHHHH
Q ss_conf             210023675465378606114689
Q gi|254780751|r  478 ESTTKVCTYCKGAGYIRSQSSVAL  501 (723)
Q Consensus       478 e~~~~~c~~c~g~g~~~~~~~~~~  501 (723)
                      ....++|+.|+|.|+++...++..
T Consensus        20 ~ii~~~C~~C~G~G~v~~~~~i~V   43 (53)
T 2bx9_A           20 EIEGTPCPACSGKGVILTAQGYTL   43 (53)
T ss_dssp             EETTEECTTTTTSSEEECHHHHHH
T ss_pred             CCCCCCCCCCCCCEEEEECCCCHH
T ss_conf             627983876677557997355369


No 51 
>>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, cytoplasm, RNA-binding, RNA binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} (J:888-977)
Probab=71.42  E-value=6.1  Score=18.26  Aligned_cols=36  Identities=14%  Similarity=0.005  Sum_probs=30.4

Q ss_pred             EEEEEEEEECCCCCEEEEEEC-CCCCCCCCHHHCCCCCC
Q ss_conf             879899783638823135327-89771302221371210
Q gi|254780751|r   42 IYLAKVTRVEPSLQAAFVDYG-GNRHGFLPFLEIHPDYY   79 (723)
Q Consensus        42 IY~G~V~~V~p~lqAAFVdiG-~~k~gFL~~~ei~~~y~   79 (723)
                      -|-|.|++|-+  .++||.+- .+-.|+.|++++.-|||
T Consensus         2 ~f~g~I~~V~~--~G~fV~l~~~g~EGlV~~~~l~~d~~   38 (90)
T 2wp8_J            2 TETGYVIKVFN--NGIVVLVPKFGVEGLIRLDNLTEDPN   38 (90)
T ss_dssp             EEEEEEEEECS--SEEEEECTTTCCEEEEEGGGTCSCGG
T ss_pred             EEEEEEEEEEE--CCEEEEECCCCCEEEEEHHHCCCCCC
T ss_conf             48899999995--71999970897189998200799754


No 52 
>>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) sequence RTPA; anti-trap, tryptophan RNA-binding attenuation protein; 2.06A {Bacillus licheniformis} PDB: 3ld0_A (A:)
Probab=69.51  E-value=2  Score=21.65  Aligned_cols=30  Identities=20%  Similarity=0.500  Sum_probs=19.8

Q ss_pred             HHHCCCCCCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf             21002367546537860611468998878899
Q gi|254780751|r  478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEE  509 (723)
Q Consensus       478 e~~~~~c~~c~g~g~~~~~~~~~~~~~r~i~~  509 (723)
                      +.-.+|||.|.|.|.|.+..-.  .+|.-|+.
T Consensus        20 ~~e~~pcp~c~~kgviltaqg~--tll~fi~k   49 (53)
T 3lcz_A           20 REEPEPCPKCLGKGVILTAQGS--TLLHFIKK   49 (53)
T ss_dssp             EETTEECTTTTTSSEEECHHHH--HHHHHHHH
T ss_pred             CCCCCCCCCCCCCEEEEECCCC--HHHHHHHH
T ss_conf             6279838634575369973553--69999998


No 53 
>>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} (A:)
Probab=68.27  E-value=4.2  Score=19.40  Aligned_cols=42  Identities=33%  Similarity=0.660  Sum_probs=29.0

Q ss_pred             CCCEEEEEEEEECCC--CCEEEEEECCCCCCCCCHHHC---CCCCCCCC
Q ss_conf             287879899783638--823135327897713022213---71210289
Q gi|254780751|r   39 KGNIYLAKVTRVEPS--LQAAFVDYGGNRHGFLPFLEI---HPDYYQIP   82 (723)
Q Consensus        39 ~GnIY~G~V~~V~p~--lqAAFVdiG~~k~gFL~~~ei---~~~y~~ip   82 (723)
                      -|..|.|+|.++.++  ..--|||||.-  ..+++++|   .++|.++|
T Consensus        41 d~~wyRa~I~~~~~~~~~~V~fiDyG~~--~~v~~~~l~~l~~~~~~lP   87 (94)
T 3fdr_A           41 NGSWYRARVLGTLENGNLDLYFVDFGDN--GDCPLKDLRALRSDFLSLP   87 (94)
T ss_dssp             TTEEEEEEEEEECTTSCEEEEETTTCCE--EEECGGGCEECCGGGGCSC
T ss_pred             CCEEEEEEEEEECCCCEEEEEEEEECCE--EEEEHHHHHHHCHHHHCCC
T ss_conf             9929999999988999599999961997--9986799660189876085


No 54 
>>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} (A:)
Probab=66.22  E-value=6.7  Score=17.96  Aligned_cols=46  Identities=11%  Similarity=0.093  Sum_probs=39.1

Q ss_pred             CCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCCCCC
Q ss_conf             3101357699999873023799999999848879998478778863
Q gi|254780751|r  517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL  562 (723)
Q Consensus       517 ~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~l~~~~  562 (723)
                      -.+.+.+|...+.+|.+.+-..|.+|++.+|++|.|..+.....+.
T Consensus        14 ~~~~i~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~~~~~   59 (85)
T 2opv_A           14 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNV   59 (85)
T ss_dssp             EEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTS
T ss_pred             EEEEEEECHHHCCEEECCCCHHHHHHHHHHCCEEEECCCCCCCCCC
T ss_conf             6899997967637549989701799999709369985788888888


No 55 
>>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational regulation, RNA chaperone, RNA/DNA binding; NMR {Homo sapiens} (A:)
Probab=65.54  E-value=5.9  Score=18.34  Aligned_cols=34  Identities=21%  Similarity=0.381  Sum_probs=27.5

Q ss_pred             CCCEEEEEEEEECCCCCEEEEE--ECCCCCCCCCHHHC
Q ss_conf             2878798997836388231353--27897713022213
Q gi|254780751|r   39 KGNIYLAKVTRVEPSLQAAFVD--YGGNRHGFLPFLEI   74 (723)
Q Consensus        39 ~GnIY~G~V~~V~p~lqAAFVd--iG~~k~gFL~~~ei   74 (723)
                      .+..+.|+|+-...|-.  ||.  =+.++.-|+|+++|
T Consensus         5 ~~~~~~G~Vk~fdkGfG--FI~~~d~~g~dvF~H~s~i   40 (79)
T 2ytv_A            5 SSGLRRATVECVKDQFG--FINYEVGDSKKLFFHVKEV   40 (79)
T ss_dssp             CCSBCCEEEEECCSSEE--EESCCCSSSSSEEEETTTC
T ss_pred             CCCCEEEEEEEECCCCE--EEEECCCCCCEEEEEHHHC
T ss_conf             67535899989338820--8881489983788895674


No 56 
>>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, cytoplasm, DNA-binding, nucleus, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Homo sapiens} (A:1-81)
Probab=64.87  E-value=8.2  Score=17.37  Aligned_cols=42  Identities=19%  Similarity=0.226  Sum_probs=36.7

Q ss_pred             CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCC
Q ss_conf             431013576999998730237999999998488799984787
Q gi|254780751|r  516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE  557 (723)
Q Consensus       516 ~~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~  557 (723)
                      .-...+.+|.+.+.++.+.+-..|.+|++.+|+.|.|..+..
T Consensus         4 ~~~~~i~Vp~~~~g~iIG~~G~~I~~i~~~tg~~I~i~~~~~   45 (81)
T 2jzx_A            4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNC   45 (81)
T ss_dssp             EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTT
T ss_pred             CEEEEEEECHHHCCEEECCCCHHHHHHHHHHCCCEEECCCCC
T ss_conf             289999985345051488998779999998679557546665


No 57 
>>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii OT3} (A:1-109)
Probab=63.56  E-value=8.6  Score=17.20  Aligned_cols=42  Identities=21%  Similarity=0.176  Sum_probs=37.3

Q ss_pred             CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCC
Q ss_conf             431013576999998730237999999998488799984787
Q gi|254780751|r  516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE  557 (723)
Q Consensus       516 ~~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~  557 (723)
                      ...+.+.+|.+.+.++.+..-..|.+|++.+|++|.|..++.
T Consensus        33 ~~~~~i~Ip~~~~g~iIGk~G~~Ik~I~~~tg~~I~i~~~~~   74 (109)
T 2e3u_A           33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSETG   74 (109)
T ss_dssp             CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTTTC
T ss_pred             CCCEEEECCHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCCC
T ss_conf             743798777687123007874889999999697743114567


No 58 
>>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=63.31  E-value=7.9  Score=17.48  Aligned_cols=42  Identities=26%  Similarity=0.244  Sum_probs=36.8

Q ss_pred             CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCC
Q ss_conf             431013576999998730237999999998488799984787
Q gi|254780751|r  516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE  557 (723)
Q Consensus       516 ~~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~  557 (723)
                      ...+.+.+|.....+|.+.+...|.+|++.+|++|.|-.+..
T Consensus        16 ~~~~~i~Vp~~~~~~iIG~~G~~i~~I~~~tg~~I~i~~~~~   57 (104)
T 2ctk_A           16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL   57 (104)
T ss_dssp             CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT
T ss_pred             CEEEEEEECHHHHHHHCCCCCCCHHHHHHHHCCEEEECCCCC
T ss_conf             789999989899988518999517899997297799789999


No 59 
>>1nz0_A Ribonuclease P protein component; endonuclease, RNAse, ALFA-beta sandwich, dimer, structural genomics, BSGC structure funded by NIH; HET: MSE; 1.20A {Thermotoga maritima} (A:)
Probab=63.28  E-value=3.4  Score=20.00  Aligned_cols=70  Identities=23%  Similarity=0.241  Sum_probs=46.3

Q ss_pred             CCCCCEEEC--CCC----CCCCEEEECCCCHHHHHHHHHHHHHHH------CCCC--CEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             576523442--278----875124204688689999999998630------0258--71699850455757999999999
Q gi|254780751|r  202 LAGRYSVLM--PNT----SKGETISRKITNPVDRKNLKEIARGLE------VPAG--MGVILRTAGASRTKIEIKRDFEY  267 (723)
Q Consensus       202 l~Gry~Vl~--P~~----~~~~~iSrki~~~~~r~~l~~~~~~~~------~~~~--~G~IiRT~a~~~~~~~l~~d~~~  267 (723)
                      +.|.|+++.  |+.    --|+.+|+|+...-.|.+++.++.+..      .+.+  +-+|++..+..++..++..++..
T Consensus        28 ~~~~~~~l~~~~~~~~~~R~g~~vsKKvg~AV~RNriKR~lRe~~R~~~~~l~~~~d~vii~~~~~~~~~~~~l~~~l~~  107 (118)
T 1nz0_A           28 LQNEYFVVLFRKNGXDYSRLGIVVKRKFGKATRRNKLKRWVREIFRRNKGVIPKGFDIVVIPRKKLSEEFERVDFWTVRE  107 (118)
T ss_dssp             EECSSEEEEEEECSSSSCEEEECCCGGGCSHHHHHHHHHHHHHHHHHHTTTSCSSEEEEEEECHHHHHHGGGSCHHHHHH
T ss_pred             EECCCEEEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHH
T ss_conf             86897899998089998569999815455505789999999999998775178888799996432011331045999999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780751|r  268 LMRL  271 (723)
Q Consensus       268 L~~~  271 (723)
                      |+..
T Consensus       108 ~l~k  111 (118)
T 1nz0_A          108 KLLN  111 (118)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             9999


No 60 
>>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus HB8} (A:1-283)
Probab=62.80  E-value=8.9  Score=17.11  Aligned_cols=74  Identities=16%  Similarity=0.152  Sum_probs=60.3

Q ss_pred             EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             06999823755444555114799999999999999873103686389603347988889999999999731278728998
Q gi|254780751|r  378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG  457 (723)
Q Consensus       378 ALt~IDVNSG~~~~~~~~e~t~l~tNleAA~EIaRQlRLRnlgGiIvIDFIdM~~~~~~~~v~~~l~~~l~~D~~~~~v~  457 (723)
                      |+.+||.+.|-.               ...+++.+|++.+++--|++|-=||.. ..+...+...+++.|......+++.
T Consensus       104 ailVvda~~G~~---------------~qt~~~~~~~~~~~~p~ii~iNKiD~~-~~~~~~~~~~~~~~l~~~~~~~~~~  167 (283)
T 1dar_A          104 AIVVFDSSQGVE---------------PQSETVWRQAEKYKVPRIAFANKMDKT-GADLWLVIRTMQERLGARPVVMQLP  167 (283)
T ss_dssp             EEEEEETTTCSC---------------HHHHHHHHHHHHTTCCEEEEEECTTST-TCCHHHHHHHHHHTTCCCEEECEEE
T ss_pred             EEEEEECCCCCC---------------HHHHHHHHHHHHCCCCEEEEEECCCCC-CCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf             899997898862---------------779999999997499849998634645-5899999999999848962688657


Q ss_pred             EECCCCEEEE
Q ss_conf             6048614898
Q gi|254780751|r  458 AISNFGLLEM  467 (723)
Q Consensus       458 ~it~lGLlEl  467 (723)
                      -++..+...+
T Consensus       168 i~~~~~~~~~  177 (283)
T 1dar_A          168 IGREDTFSGI  177 (283)
T ss_dssp             ESCGGGCCEE
T ss_pred             CCCCCCEEEE
T ss_conf             6667750058


No 61 
>>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} PDB: 1mjc_A 3mef_A (B:)
Probab=62.57  E-value=9  Score=17.08  Aligned_cols=38  Identities=18%  Similarity=0.239  Sum_probs=31.8

Q ss_pred             CCEEEEEEEEECCCCCEEEEEEC-CCCCCCCCHHHCCCC
Q ss_conf             87879899783638823135327-897713022213712
Q gi|254780751|r   40 GNIYLAKVTRVEPSLQAAFVDYG-GNRHGFLPFLEIHPD   77 (723)
Q Consensus        40 GnIY~G~V~~V~p~lqAAFVdiG-~~k~gFL~~~ei~~~   77 (723)
                      ...|.|+|+...+.-.=-||.-. .+..-|+|++.+...
T Consensus         3 ~~~~~G~Vk~f~~~kGyGFI~~~~g~~dif~h~s~l~~~   41 (71)
T 3i2z_B            3 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTN   41 (71)
T ss_dssp             --CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCS
T ss_pred             CCCCEEEEEEECCCCCEEEEEECCCCCCEEEEHHHHCCC
T ss_conf             750047999990999848998689981299991880613


No 62 
>>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} (A:1-79)
Probab=61.12  E-value=9  Score=17.06  Aligned_cols=42  Identities=17%  Similarity=0.136  Sum_probs=37.1

Q ss_pred             CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCC
Q ss_conf             431013576999998730237999999998488799984787
Q gi|254780751|r  516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE  557 (723)
Q Consensus       516 ~~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~  557 (723)
                      +..+.+.+|++...++.+.+-..+.+|++.+|+.|.|..++.
T Consensus         3 ap~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~   44 (79)
T 1tua_A            3 KPRIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENS   44 (79)
T ss_dssp             CCCEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETTTT
T ss_pred             CCEEEEECCHHHCCCCCCCCCHHHHHHHHHHCCEEEEECCCC
T ss_conf             974998888887322668872769999999898589952655


No 63 
>>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} (A:)
Probab=60.45  E-value=9.7  Score=16.83  Aligned_cols=42  Identities=21%  Similarity=0.265  Sum_probs=37.1

Q ss_pred             CCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCC
Q ss_conf             101357699999873023799999999848879998478778
Q gi|254780751|r  518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA  559 (723)
Q Consensus       518 ~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~l~  559 (723)
                      .+.+.+|...+.++.+.+-..|.+|++.+|++|.|..+....
T Consensus         4 ~~~~~Vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~~   45 (87)
T 1ec6_A            4 LVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL   45 (87)
T ss_dssp             EEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS
T ss_pred             EEEEEECHHHCCEEECCCCHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             999980976658569979754999999729789980577889


No 64 
>>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=60.35  E-value=6.4  Score=18.12  Aligned_cols=50  Identities=12%  Similarity=0.026  Sum_probs=42.8

Q ss_pred             CCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCCCCCEEEE
Q ss_conf             31013576999998730237999999998488799984787788633897
Q gi|254780751|r  517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE  566 (723)
Q Consensus       517 ~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~l~~~~f~Ie  566 (723)
                      -...+.+|.....+|.+.+-..|.+|+..++++|.|-.++.-....+.|.
T Consensus        17 ~~~~i~vp~~~~g~iIGk~G~~i~~I~~~tg~~I~i~~~~~~~~~~i~I~   66 (95)
T 2ctm_A           17 VSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVT   66 (95)
T ss_dssp             CCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEE
T ss_pred             EEEEEEECHHHHHHHCCCCCCCHHHHHHHHCCEEEECCCCCCCCCEEEEE
T ss_conf             78999999899977518898339999998298699687656665504676


No 65 
>>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, cytoplasm, DNA-binding, nucleus, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Homo sapiens} (A:82-160)
Probab=60.21  E-value=9.8  Score=16.81  Aligned_cols=49  Identities=10%  Similarity=0.012  Sum_probs=41.6

Q ss_pred             CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCCCCCEE
Q ss_conf             4310135769999987302379999999984887999847877886338
Q gi|254780751|r  516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY  564 (723)
Q Consensus       516 ~~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~l~~~~f~  564 (723)
                      .-...+.+|...+.++.+.+-..|.+|++.+|.+|.|..++.-..++-.
T Consensus         7 ~~~~~i~Vp~~~vg~iIG~~G~~Ik~I~~~tga~I~i~~~~~~~~~~r~   55 (79)
T 2jzx_A            7 PVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERA   55 (79)
T ss_dssp             SEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEE
T ss_pred             EEEEEEECCHHHHHHEECCCCHHHHHHHHHHCCEEEECCCCCCCCCCEE
T ss_conf             0468872788885022268985899999985996998888899998338


No 66 
>>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:715-792)
Probab=59.97  E-value=3.1  Score=20.25  Aligned_cols=24  Identities=21%  Similarity=0.530  Sum_probs=13.9

Q ss_pred             CCCHHHHHC--CCCCCCCCEEEEECC
Q ss_conf             630112100--236754653786061
Q gi|254780751|r  473 RSSVLESTT--KVCTYCKGAGYIRSQ  496 (723)
Q Consensus       473 r~sl~e~~~--~~c~~c~g~g~~~~~  496 (723)
                      .+++....+  --||.|.|+|.|...
T Consensus        29 ~~~~FSfNs~~G~C~~C~G~G~i~~~   54 (78)
T 2r6f_A           29 KKGRFSFNVKGGRCEACHGDGIIKIE   54 (78)
T ss_dssp             CTTTTCTTSTTTBCTTTTTCSEEEEC
T ss_pred             CCCCCCCCCCCCCEECCCCCCEEECC
T ss_conf             64443412455410101376245134


No 67 
>>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:)
Probab=59.53  E-value=10  Score=16.73  Aligned_cols=49  Identities=10%  Similarity=0.005  Sum_probs=41.4

Q ss_pred             CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCCCCCEE
Q ss_conf             4310135769999987302379999999984887999847877886338
Q gi|254780751|r  516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY  564 (723)
Q Consensus       516 ~~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~l~~~~f~  564 (723)
                      ...+.+.+|...+.+|.+..-..|.+|++.+|++|.|..+........+
T Consensus        14 ~~~~~i~ip~~~vg~iIG~~G~~Ik~I~~~tga~I~i~~~~~~~~~~~r   62 (94)
T 1x4m_A           14 NAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADK   62 (94)
T ss_dssp             CEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCE
T ss_pred             CEEEEEEECHHHHCCEECCCCHHHHHHHHHCCCEEEECCCCCCCCCCCE
T ss_conf             7799999786750504897973599999872926997568878899830


No 68 
>>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} (A:)
Probab=58.76  E-value=8.3  Score=17.33  Aligned_cols=48  Identities=15%  Similarity=0.167  Sum_probs=38.4

Q ss_pred             CCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCCCC-CEEE
Q ss_conf             10135769999987302379999999984887999847877886-3389
Q gi|254780751|r  518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK-LFYI  565 (723)
Q Consensus       518 ~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~l~~~-~f~I  565 (723)
                      .+.+.+|.+...++.+.+...|.+|++.+|++|.|..++.-... .+.|
T Consensus         7 ~~~i~ip~~~~~~iIG~~G~~i~~I~~~tga~I~i~~~~~~~~~~~i~I   55 (82)
T 1wvn_A            7 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTI   55 (82)
T ss_dssp             EEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEE
T ss_pred             EEEEEECHHHCCEEECCCCCCHHHHHHHCCCEEEEECCCCCCCCEEEEE
T ss_conf             9999988563343799598525899997595899954789998228999


No 69 
>>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* (A:601-677)
Probab=58.38  E-value=3.5  Score=19.94  Aligned_cols=14  Identities=29%  Similarity=0.942  Sum_probs=9.9

Q ss_pred             CCCCCCCEEEEECC
Q ss_conf             36754653786061
Q gi|254780751|r  483 VCTYCKGAGYIRSQ  496 (723)
Q Consensus       483 ~c~~c~g~g~~~~~  496 (723)
                      -||.|.|+|.+...
T Consensus        40 rCp~C~G~G~i~~~   53 (77)
T 2vf7_A           40 RCEHCQGEGWVMVE   53 (77)
T ss_dssp             BCTTTTTCSEEEET
T ss_pred             CCEECCCCCCCCHH
T ss_conf             41000146620002


No 70 
>>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif; 2.00A {Homo sapiens} (A:)
Probab=57.50  E-value=8.6  Score=17.20  Aligned_cols=43  Identities=21%  Similarity=0.242  Sum_probs=37.1

Q ss_pred             CCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCCC
Q ss_conf             1013576999998730237999999998488799984787788
Q gi|254780751|r  518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD  560 (723)
Q Consensus       518 ~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~l~~  560 (723)
                      .+.+.+|...+..+.+.+-..|.+|++.+|.+|.|..+.....
T Consensus         4 ~~~i~vp~~~vg~iIG~~G~~I~~I~~~tga~I~i~~~~~~~~   46 (76)
T 1dtj_A            4 LVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP   46 (76)
T ss_dssp             EEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCST
T ss_pred             EEEEEECHHHCCEEECCCCHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf             9999939887373599697259999987197999972888899


No 71 
>>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=56.58  E-value=7  Score=17.83  Aligned_cols=50  Identities=14%  Similarity=0.066  Sum_probs=41.1

Q ss_pred             CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCCCCCEEE
Q ss_conf             43101357699999873023799999999848879998478778863389
Q gi|254780751|r  516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI  565 (723)
Q Consensus       516 ~~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~l~~~~f~I  565 (723)
                      .-.+.+.+|...+.+|.+.+-..|..|++.+++.|.|..+.....++-.|
T Consensus        16 ~~~~~i~Vp~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~~~~~~~~~i   65 (97)
T 2ctl_A           16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQI   65 (97)
T ss_dssp             TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEE
T ss_pred             CEEEEEEECHHHHHHCCCCCCCCHHHHHHHHCCEEEECCCCCCCCCCCEE
T ss_conf             65799998989996613889741999999869869946877789876645


No 72 
>>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} (A:)
Probab=56.46  E-value=11  Score=16.39  Aligned_cols=47  Identities=15%  Similarity=-0.060  Sum_probs=40.2

Q ss_pred             CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCCCCC
Q ss_conf             43101357699999873023799999999848879998478778863
Q gi|254780751|r  516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL  562 (723)
Q Consensus       516 ~~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~l~~~~  562 (723)
                      ...+.+.+|.....+|.+.+-..|.+|++.+|++|.|..+.....+.
T Consensus        14 ~~~~~i~vp~~~v~~iIGk~G~~ik~I~~~tga~I~i~~~~~~~~~~   60 (104)
T 1we8_A           14 PVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLL   60 (104)
T ss_dssp             EEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSS
T ss_pred             CEEEEEEECHHHHHHEECCCCCCHHHHHHHCCCEEEECCCCCCCCCC
T ss_conf             88999998978760436929988119898659889978888888888


No 73 
>>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} (A:1-81)
Probab=56.46  E-value=9.1  Score=17.02  Aligned_cols=45  Identities=11%  Similarity=0.097  Sum_probs=38.5

Q ss_pred             CCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCCCCC
Q ss_conf             101357699999873023799999999848879998478778863
Q gi|254780751|r  518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL  562 (723)
Q Consensus       518 ~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~l~~~~  562 (723)
                      .+.+.+|...+.++.+..-..|.+|+..+++.|.|..+.....+.
T Consensus         3 t~~i~Vp~~~vg~iIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~   47 (81)
T 2jvz_A            3 VQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNV   47 (81)
T ss_dssp             EEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSS
T ss_pred             EEEEECCHHHHCEEECCCCHHHHHHHHHHCCEEEEECCCCCCCCC
T ss_conf             899984736718468999876999999879889995054555566


No 74 
>>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} (A:64-246)
Probab=56.16  E-value=6  Score=18.30  Aligned_cols=44  Identities=23%  Similarity=0.483  Sum_probs=27.9

Q ss_pred             CCCCEEEEEEEEECCC--CCEEEEEECCCCC-CCCCHHHCCCCCCCC
Q ss_conf             4287879899783638--8231353278977-130222137121028
Q gi|254780751|r   38 IKGNIYLAKVTRVEPS--LQAAFVDYGGNRH-GFLPFLEIHPDYYQI   81 (723)
Q Consensus        38 ~~GnIY~G~V~~V~p~--lqAAFVdiG~~k~-gFL~~~ei~~~y~~i   81 (723)
                      .-|.-|.|+|++|.++  +.--|||+|..-. .+..+..+..++..+
T Consensus        14 ~d~~wyRa~V~~v~~~~~~~V~~iD~G~~~~v~~~~l~~~~~~~~~~   60 (183)
T 2hqx_A           14 VDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTR   60 (183)
T ss_dssp             TTSCEEEEEEEEEEETTEEEEEETTTCCEEEECGGGEECCCGGGSTT
T ss_pred             CCCCEEEEEEEEECCCCEEEEEEEECCCCEEEEHHHCCCCCHHHCCC
T ss_conf             69979899999955898099999966981999989971578344214


No 75 
>>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} (A:)
Probab=55.97  E-value=8.3  Score=17.33  Aligned_cols=34  Identities=18%  Similarity=0.373  Sum_probs=24.4

Q ss_pred             CCCEEEEEEEEECCCC---CEEEEEECCCCCCCCCHHHC
Q ss_conf             2878798997836388---23135327897713022213
Q gi|254780751|r   39 KGNIYLAKVTRVEPSL---QAAFVDYGGNRHGFLPFLEI   74 (723)
Q Consensus        39 ~GnIY~G~V~~V~p~l---qAAFVdiG~~k~gFL~~~ei   74 (723)
                      =|.-|.|+|..+.+.-   .--|||||.-  .-+++++|
T Consensus        17 D~~wYRa~I~~i~~~~~~~~V~fvDyGn~--e~v~~~~l   53 (59)
T 1mhn_A           17 DGCIYPATIASIDFKRETCVVVYTGYGNR--EEQNLSDL   53 (59)
T ss_dssp             TSCEEEEEEEEEETTTTEEEEEETTTTEE--EEEEGGGC
T ss_pred             CCCEEEEEEEEECCCCCEEEEEEECCCCE--EEEEHHHC
T ss_conf             89898999999838899999999817999--99889997


No 76 
>>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} (A:89-174)
Probab=55.33  E-value=12  Score=16.26  Aligned_cols=48  Identities=8%  Similarity=-0.005  Sum_probs=40.6

Q ss_pred             CCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCCCC
Q ss_conf             364310135769999987302379999999984887999847877886
Q gi|254780751|r  514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK  561 (723)
Q Consensus       514 ~~~~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~l~~~  561 (723)
                      .....+.+.+|.+.+.++.+..-..|.+|++.+|++|.|..+......
T Consensus        13 ~~~~~~~i~Ip~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~~~~   60 (86)
T 1j4w_A           13 GGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNAD   60 (86)
T ss_dssp             ---CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSC
T ss_pred             CCCCCEEEEECHHHHHHEECCCCCHHHHHHHHHCCEEEECCCCCCCCC
T ss_conf             566426999887875243789995799999973998997788888899


No 77 
>>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} (A:82-164)
Probab=55.14  E-value=6.1  Score=18.24  Aligned_cols=50  Identities=14%  Similarity=0.046  Sum_probs=40.7

Q ss_pred             CCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCCCCC
Q ss_conf             03643101357699999873023799999999848879998478778863
Q gi|254780751|r  513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL  562 (723)
Q Consensus       513 ~~~~~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~l~~~~  562 (723)
                      ......+.+.+|.....++.+.+-..|.+|++.+|+.|.|..++.-....
T Consensus         6 ~~~~~~~~i~vp~~~~g~iIG~~G~~I~~I~~~tga~I~i~~~~~~~~~~   55 (83)
T 2jvz_A            6 SRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEK   55 (83)
T ss_dssp             TSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEE
T ss_pred             CCCCEEEEECCCHHHHHHHCCCCCCEEEHHHHHCCCEEEECCCCCCCCCE
T ss_conf             44320245315587888751899842212466079679834888899843


No 78 
>>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} (A:410-468)
Probab=54.78  E-value=7.5  Score=17.63  Aligned_cols=34  Identities=32%  Similarity=0.683  Sum_probs=25.2

Q ss_pred             CCCEEEEEEEEECCC--CCEEEEEECCCCCCCCCHHHC
Q ss_conf             287879899783638--823135327897713022213
Q gi|254780751|r   39 KGNIYLAKVTRVEPS--LQAAFVDYGGNRHGFLPFLEI   74 (723)
Q Consensus        39 ~GnIY~G~V~~V~p~--lqAAFVdiG~~k~gFL~~~ei   74 (723)
                      -|..|.|+|..+.++  ..--|||||.-..  +++++|
T Consensus        15 Dg~wYRa~I~~i~~~~~~~V~fvDyGn~~~--v~~~~l   50 (59)
T 3bdl_A           15 DGEWYRARVEKVESPAKIHVFYIDYGNREV--LPSTRL   50 (59)
T ss_dssp             TSCEEEEEEEEEEETTEEEEEETTTCCEEE--ECGGGE
T ss_pred             CCCEEEEEEEEECCCCCEEEEEEECCCEEE--EEHHHE
T ss_conf             897899999985689955899994486299--887992


No 79 
>>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} (A:)
Probab=54.49  E-value=11  Score=16.48  Aligned_cols=49  Identities=8%  Similarity=-0.007  Sum_probs=39.6

Q ss_pred             CCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCCCCCEEE
Q ss_conf             3101357699999873023799999999848879998478778863389
Q gi|254780751|r  517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI  565 (723)
Q Consensus       517 ~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~l~~~~f~I  565 (723)
                      ..+.+.+|.....++.+.+-..|.+|+..+|+.|.|..+.....+.-.+
T Consensus        85 ~~~~~~ip~~~~g~iIG~~G~~ik~I~~~tg~~I~i~~~~~~~~~~~~~  133 (163)
T 3krm_A           85 LETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVI  133 (163)
T ss_dssp             EEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEE
T ss_pred             CEEEECCCHHHHHHCCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCEEE
T ss_conf             1256339778786435799779999999849889988888899898048


No 80 
>>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=53.59  E-value=9.1  Score=17.03  Aligned_cols=49  Identities=22%  Similarity=0.154  Sum_probs=39.4

Q ss_pred             CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCCCCCEEEE
Q ss_conf             431013576999998730237999999998488799984787788633897
Q gi|254780751|r  516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE  566 (723)
Q Consensus       516 ~~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~l~~~~f~Ie  566 (723)
                      .-...+.+|.....+|.+.+-..|.+|++.++++|.|..+..  ...+.|.
T Consensus         9 ~~~~~i~vp~~~~~~iIGk~G~~i~~I~~~tg~~I~i~~~~~--~~~i~I~   57 (83)
T 2dgr_A            9 QTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDK--EPVFAVT   57 (83)
T ss_dssp             SEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSSS--CCEEEEE
T ss_pred             EEEEEEEECHHHHHHEECCCCCCHHHHHHHHCCEEEECCCCC--CCEEEEC
T ss_conf             089999999787503389689129999998799899657888--5489964


No 81 
>>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:)
Probab=53.50  E-value=8.8  Score=17.14  Aligned_cols=34  Identities=26%  Similarity=0.404  Sum_probs=25.5

Q ss_pred             CCCEEEEEEEEECCC---CCEEEEEECCCCCCCCCHHHC
Q ss_conf             287879899783638---823135327897713022213
Q gi|254780751|r   39 KGNIYLAKVTRVEPS---LQAAFVDYGGNRHGFLPFLEI   74 (723)
Q Consensus        39 ~GnIY~G~V~~V~p~---lqAAFVdiG~~k~gFL~~~ei   74 (723)
                      -|..|.|+|..|.+.   ..--|||||..  ..+++++|
T Consensus        23 d~~wyRa~I~~i~~~~~~~~V~fvDyG~~--e~v~~~~l   59 (78)
T 2d9t_A           23 DNKFYRAEVEALHSSGMTAVVKFTDYGNY--EEVLLSNI   59 (78)
T ss_dssp             TCCEEEEEEEEECSSSSEEEEEETTTTEE--EEEEGGGE
T ss_pred             CCCEEEEEEEEECCCCCEEEEEEEECCCE--EEEEHHHE
T ss_conf             99699999999648999899999968985--99887990


No 82 
>>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein/RNA complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* (A:)
Probab=53.24  E-value=13  Score=16.04  Aligned_cols=49  Identities=8%  Similarity=0.039  Sum_probs=38.5

Q ss_pred             CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCCCCCEE
Q ss_conf             4310135769999987302379999999984887999847877886338
Q gi|254780751|r  516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY  564 (723)
Q Consensus       516 ~~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~l~~~~f~  564 (723)
                      ...+.+.+|.....++.+.+-..+.+|++.+|++|.|..++......-+
T Consensus       103 ~~~~~i~Vp~~~~g~iIG~~G~~i~~i~~~tg~~I~i~~~~~~~~~~~r  151 (178)
T 2anr_A          103 ANQVKIIVPNSTAGLIIGKGGATVKAIXEQSGAWVQLSQKPDGINLQNR  151 (178)
T ss_dssp             GGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEE
T ss_pred             CEEEEEEECHHHHHHEECCCCCCHHHHHHHHCCEEEEECCCCCCCCCCE
T ss_conf             4479997176871012268995569988863987998078888899830


No 83 
>>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein/DNA complex; 1.70A {Homo sapiens} (A:)
Probab=51.68  E-value=13  Score=15.87  Aligned_cols=42  Identities=19%  Similarity=0.233  Sum_probs=36.2

Q ss_pred             CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCC
Q ss_conf             431013576999998730237999999998488799984787
Q gi|254780751|r  516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE  557 (723)
Q Consensus       516 ~~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~  557 (723)
                      .-.+.+.+|.....++.+.+-..|..|++.+|++|.|..+.+
T Consensus         4 ~~~~~i~vp~~~~g~iIG~~G~~Ik~i~~~tg~~I~i~~~~~   45 (73)
T 2axy_A            4 TLTIRLLXHGKEVGSIIGKKGESVKKXREESGARINISEGNC   45 (73)
T ss_dssp             CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCC
T ss_pred             CEEEEEEECHHHCCEEECCCCCCHHHHHHHHCCEEEECCCCC
T ss_conf             489999988788195899998009999998699699748999


No 84 
>>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} (A:1-190)
Probab=51.62  E-value=13  Score=15.87  Aligned_cols=70  Identities=16%  Similarity=0.036  Sum_probs=55.4

Q ss_pred             EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH-CCCCEEE
Q ss_conf             069998237554445551147999999999999998731036863896033479888899999999997312-7872899
Q gi|254780751|r  378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK-DRARVQV  456 (723)
Q Consensus       378 ALt~IDVNSG~~~~~~~~e~t~l~tNleAA~EIaRQlRLRnlgGiIvIDFIdM~~~~~~~~v~~~l~~~l~~-D~~~~~v  456 (723)
                      |+.+||.+.|-.               +-..++.++.++...-.||+|-=||+.+......+.+.+++.+.. ....+.|
T Consensus        87 ailVvda~~g~~---------------~~t~~~~~~~~~~~~p~Iv~iNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~pi  151 (190)
T 2elf_A           87 AVLCIPPQGLDA---------------HTGECIIALDLLGFKHGIIALTRSDSTHXHAIDELKAKLKVITSGTVLQDWEC  151 (190)
T ss_dssp             EEEEECTTCCCH---------------HHHHHHHHHHHTTCCEEEEEECCGGGSCHHHHHHHHHHHHHHTTTSTTTTCEE
T ss_pred             EEEEECCCCCCH---------------HHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCE
T ss_conf             999941554322---------------56789998874156641231245543214443456544555402655445650


Q ss_pred             EEECCC
Q ss_conf             860486
Q gi|254780751|r  457 GAISNF  462 (723)
Q Consensus       457 ~~it~l  462 (723)
                      +++|.+
T Consensus       152 vpiSA~  157 (190)
T 2elf_A          152 ISLNTN  157 (190)
T ss_dssp             EECCCC
T ss_pred             EEEECC
T ss_conf             366555


No 85 
>>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} (A:21-122)
Probab=51.60  E-value=5.9  Score=18.33  Aligned_cols=48  Identities=8%  Similarity=0.017  Sum_probs=27.5

Q ss_pred             CEEEEEECCCCEEEEECCCCCC-CHHHHH--CCCCCCCCCEEEEECCHHHH
Q ss_conf             2899860486148985156663-011210--02367546537860611468
Q gi|254780751|r  453 RVQVGAISNFGLLEMSRQRIRS-SVLEST--TKVCTYCKGAGYIRSQSSVA  500 (723)
Q Consensus       453 ~~~v~~it~lGLlEltRkR~r~-sl~e~~--~~~c~~c~g~g~~~~~~~~~  500 (723)
                      .+.....+.+|.+++...--.- .-...+  ..+|+.|+|.|++....++.
T Consensus        45 ~~~~~~~~~~g~~q~~~~c~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~~~   95 (102)
T 1nlt_A           45 IKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILE   95 (102)
T ss_dssp             CEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEEEEEEE
T ss_pred             EEEEEEECCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCEEEEEEEEEE
T ss_conf             699887627762155665677789764834677650037955898889999


No 86 
>>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} (A:)
Probab=50.92  E-value=3.8  Score=19.68  Aligned_cols=16  Identities=25%  Similarity=0.752  Sum_probs=7.2

Q ss_pred             HHCCCCCCCCCEEEEE
Q ss_conf             1002367546537860
Q gi|254780751|r  479 STTKVCTYCKGAGYIR  494 (723)
Q Consensus       479 ~~~~~c~~c~g~g~~~  494 (723)
                      .+..+|+.|+|+|.+.
T Consensus        48 ~~~~~C~~C~G~G~~i   63 (79)
T 1exk_A           48 AVQQTCPHCQGRGTLI   63 (79)
T ss_dssp             EEEEECTTTTTSSEEC
T ss_pred             EEEEECCCCCCEEEEC
T ss_conf             7457998687672481


No 87 
>>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} (A:)
Probab=50.84  E-value=9.7  Score=16.84  Aligned_cols=35  Identities=17%  Similarity=0.343  Sum_probs=26.3

Q ss_pred             CCCCEEEEEEEEECCC---CCEEEEEECCCCCCCCCHHHC
Q ss_conf             4287879899783638---823135327897713022213
Q gi|254780751|r   38 IKGNIYLAKVTRVEPS---LQAAFVDYGGNRHGFLPFLEI   74 (723)
Q Consensus        38 ~~GnIY~G~V~~V~p~---lqAAFVdiG~~k~gFL~~~ei   74 (723)
                      .-|..|.|+|..+.++   .+--|||||..  ..++.++|
T Consensus        23 ~d~~wyRa~I~~~~~~~~~~~V~fvDyG~~--e~V~~~~l   60 (88)
T 1g5v_A           23 EDGCIYPATIASIDFKRETCVVVYTGYGNR--EEQNLSDL   60 (88)
T ss_dssp             TTCCEEEEEEEEEETTTTEEEEEETTTCCE--EEEEGGGC
T ss_pred             CCCCEEEEEEEEEEECCCCEEEEEECCCCH--HHHHHHHH
T ss_conf             578471356777773156079998036856--66317888


No 88 
>>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} (A:1-88)
Probab=50.14  E-value=14  Score=15.71  Aligned_cols=48  Identities=17%  Similarity=0.023  Sum_probs=39.7

Q ss_pred             CCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCCCCC-EEE
Q ss_conf             101357699999873023799999999848879998478778863-389
Q gi|254780751|r  518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL-FYI  565 (723)
Q Consensus       518 ~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~l~~~~-f~I  565 (723)
                      .+.+.+|.+...+|.+.+-..|.+|++.+|+.|.|..+..-.... +.|
T Consensus         4 ~~~i~vp~~~vg~iIG~~G~~i~~i~~~tg~~I~i~~~~~~~~~~~v~i   52 (88)
T 1j4w_A            4 MIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQI   52 (88)
T ss_dssp             EEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEE
T ss_pred             EEEEECCHHHEEEEECCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEE
T ss_conf             6999808346005799897799999997698999971688887406885


No 89 
>>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=49.72  E-value=14  Score=15.67  Aligned_cols=41  Identities=12%  Similarity=-0.001  Sum_probs=36.8

Q ss_pred             CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECC
Q ss_conf             43101357699999873023799999999848879998478
Q gi|254780751|r  516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI  556 (723)
Q Consensus       516 ~~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~  556 (723)
                      ...+.+.+|++...++.+.+-..+.+|++.+|++|.|..+.
T Consensus        14 ~~~~~i~Vp~~~~~~iIGk~G~~Ik~I~~~tga~I~i~~~~   54 (91)
T 2cpq_A           14 AFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDED   54 (91)
T ss_dssp             SEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETT
T ss_pred             CEEEEEEECHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCC
T ss_conf             60699998989987881896089999999629779630577


No 90 
>>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} (A:)
Probab=48.71  E-value=15  Score=15.56  Aligned_cols=50  Identities=16%  Similarity=0.193  Sum_probs=40.1

Q ss_pred             CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCCCCC-EEE
Q ss_conf             43101357699999873023799999999848879998478778863-389
Q gi|254780751|r  516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL-FYI  565 (723)
Q Consensus       516 ~~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~l~~~~-f~I  565 (723)
                      .-.+.+.+|.....++.+.+-..|.+|++.+|..|.|..++.-.... +.|
T Consensus         4 ~~~~~i~vp~~~~g~iIG~~G~~I~~I~~~tga~I~i~~~~~~~~~~~i~I   54 (76)
T 2p2r_A            4 TTSHELTIPNDLIGCIIGRQGAKINEIRQXSGAQIKIANPVEGSTDRQVTI   54 (76)
T ss_dssp             CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEE
T ss_pred             CEEEEEEECHHHCCEEECCCCCHHHHHHHHCCCEEEECCCCCCCCCEEEEE
T ss_conf             478999998676584599598528999987697899707899999458999


No 91 
>>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} (A:148-235)
Probab=48.48  E-value=9.7  Score=16.83  Aligned_cols=40  Identities=18%  Similarity=0.120  Sum_probs=34.8

Q ss_pred             CCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCC
Q ss_conf             1013576999998730237999999998488799984787
Q gi|254780751|r  518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE  557 (723)
Q Consensus       518 ~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~  557 (723)
                      ...+.+|++....+.+.+-..+.+|++.++++|.|..+..
T Consensus         2 t~~i~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~   41 (88)
T 2z0s_A            2 GKIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVARNGR   41 (88)
T ss_dssp             SEEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEETTTE
T ss_pred             CEEEEECHHHHHHHHCCCHHHHHHHHHCCCEEEEEECCCE
T ss_conf             1796526688323025752268877507785999918908


No 92 
>>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=48.17  E-value=15  Score=15.51  Aligned_cols=35  Identities=20%  Similarity=0.148  Sum_probs=26.4

Q ss_pred             CCCEEEEEEEEECCCCC-EEEEEECCCCCCCCCHHHCC
Q ss_conf             28787989978363882-31353278977130222137
Q gi|254780751|r   39 KGNIYLAKVTRVEPSLQ-AAFVDYGGNRHGFLPFLEIH   75 (723)
Q Consensus        39 ~GnIY~G~V~~V~p~lq-AAFVdiG~~k~gFL~~~ei~   75 (723)
                      =|.-|.|+|+.|.++-. ..|+|||....  +++.+|.
T Consensus        22 Dg~~Yra~I~~v~~~~~~~v~fDyGn~e~--V~~~~i~   57 (74)
T 2equ_A           22 DCRYYPAKIEAINKEGTFTVQFYDGVIRC--LKRMHIK   57 (74)
T ss_dssp             SSSEEEEEEEEESTTSSEEEEETTSCEEE--ECGGGEE
T ss_pred             CCCEEEEEEEEECCCCEEEEEEECCCEEE--ECHHHCE
T ss_conf             99899689999867988999997299799--8689987


No 93 
>>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational regulation, RNA chaperone, RNA/DNA binding, QB fold, greek- KEY topology; NMR {Homo sapiens} (A:)
Probab=48.16  E-value=15  Score=15.51  Aligned_cols=35  Identities=14%  Similarity=0.270  Sum_probs=27.2

Q ss_pred             CCCEEEEEEEEECCCCCEEEEEE-CCCCCCCCCHHHCC
Q ss_conf             28787989978363882313532-78977130222137
Q gi|254780751|r   39 KGNIYLAKVTRVEPSLQAAFVDY-GGNRHGFLPFLEIH   75 (723)
Q Consensus        39 ~GnIY~G~V~~V~p~lqAAFVdi-G~~k~gFL~~~ei~   75 (723)
                      ...-|.|+|+..-.|-.  ||.- ..++.-|+|++++.
T Consensus         5 ~~~r~~G~Vk~~~kGfG--FI~~~~~~~diFfH~s~~~   40 (89)
T 1x65_A            5 SSGREMGVIAAMRDGFG--FIKCVDRDVRMFFHFSEIL   40 (89)
T ss_dssp             CCCCEEEEEEECCTTBC--EEEESSSSSCCCCBTTGGG
T ss_pred             CCCCEEEEEEEECCCEE--EEECCCCCCCEEEEHHHCC
T ss_conf             78857799999708714--7862899940899934605


No 94 
>>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} (A:)
Probab=47.38  E-value=11  Score=16.43  Aligned_cols=45  Identities=16%  Similarity=0.143  Sum_probs=38.1

Q ss_pred             CCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCCCC
Q ss_conf             310135769999987302379999999984887999847877886
Q gi|254780751|r  517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK  561 (723)
Q Consensus       517 ~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~l~~~  561 (723)
                      -.+.+.+|.+...++.+.+-..|.+|++.+|+.|.|..+......
T Consensus         7 ~~~~i~vp~~~~~~iIG~~G~~i~~I~~~tga~I~i~~~~~~~~~   51 (82)
T 1zzk_A            7 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSED   51 (82)
T ss_dssp             EEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSE
T ss_pred             EEEEEEECHHHCCEEECCCCCHHHHHHHHCCCEEEECCCCCCCCC
T ss_conf             789999886762815996982389999754987996478899984


No 95 
>>2bh8_A 1B11; transcription, molecular evolution, unique architecture, activator, transcription regulation, phosphorylation; 1.9A {Escherichia coli} (A:1-71)
Probab=45.48  E-value=17  Score=15.23  Aligned_cols=46  Identities=11%  Similarity=0.126  Sum_probs=35.9

Q ss_pred             CCCCCCCCEEEEEEEEECCCCCEEEEEECC-CCCCCCCHHHCCCCCC
Q ss_conf             346042878798997836388231353278-9771302221371210
Q gi|254780751|r   34 HKKQIKGNIYLAKVTRVEPSLQAAFVDYGG-NRHGFLPFLEIHPDYY   79 (723)
Q Consensus        34 ~~~~~~GnIY~G~V~~V~p~lqAAFVdiG~-~k~gFL~~~ei~~~y~   79 (723)
                      ......+.+|.|+|+---..=.--||.-.. +..-|+|++.|..++|
T Consensus         8 ~~~~~~~~~~~G~Vk~fn~~kGfGFI~~~d~~~dvFvH~s~i~~~g~   54 (71)
T 2bh8_A            8 HGSRLQSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAGSSGAA   54 (71)
T ss_dssp             --------CEEEEEEEEEGGGTEEEEEESSSSCEEEEECCCSCSSSC
T ss_pred             CCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCC
T ss_conf             42304468458889998689987998836899504666300121220


No 96 
>>1m1q_A Small tetraheme cytochrome C; atomic structure of oxidized tetraheme cytochrome C, electron transport; HET: HEM; 0.97A {Shewanella oneidensis mr-1} (A:)
Probab=44.44  E-value=7  Score=17.83  Aligned_cols=14  Identities=7%  Similarity=0.003  Sum_probs=5.6

Q ss_pred             HCCCCCCCCCEEEE
Q ss_conf             00236754653786
Q gi|254780751|r  480 TTKVCTYCKGAGYI  493 (723)
Q Consensus       480 ~~~~c~~c~g~g~~  493 (723)
                      +..+|+.|+|+|.+
T Consensus        57 ~~~~C~~C~G~G~~   70 (91)
T 1m1q_A           57 VCADCHAVHDMNVG   70 (91)
T ss_dssp             CGGGTCCTTTSBTT
T ss_pred             CCCCCCCCCCCCCC
T ss_conf             21558777676874


No 97 
>>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=44.39  E-value=15  Score=15.62  Aligned_cols=34  Identities=12%  Similarity=0.117  Sum_probs=24.2

Q ss_pred             CCCEEEEEEEEECCC--CCEEEEEECCCCCCCCCHHHC
Q ss_conf             287879899783638--823135327897713022213
Q gi|254780751|r   39 KGNIYLAKVTRVEPS--LQAAFVDYGGNRHGFLPFLEI   74 (723)
Q Consensus        39 ~GnIY~G~V~~V~p~--lqAAFVdiG~~k~gFL~~~ei   74 (723)
                      -|.-|.|+|..+.++  ..--|||||..-.  ++.++|
T Consensus        35 d~~wyRa~I~~~~~~~~~~V~fvD~G~~~~--v~~~~l   70 (85)
T 2eqk_A           35 KNQWRRGQIIRMVTDTLVEVLLYDVGVELV--VNVDCL   70 (85)
T ss_dssp             SCCEEEEEEEEECSSSEEEEECTTTCCEEE--EETTTE
T ss_pred             CCEEEEEEEEEECCCCCEEEEEEEECCEEE--ECHHHH
T ss_conf             998867899997189968999981010587--517876


No 98 
>>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} (A:)
Probab=43.54  E-value=17  Score=15.08  Aligned_cols=46  Identities=15%  Similarity=0.081  Sum_probs=38.6

Q ss_pred             CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCCCC
Q ss_conf             4310135769999987302379999999984887999847877886
Q gi|254780751|r  516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK  561 (723)
Q Consensus       516 ~~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~l~~~  561 (723)
                      ...+.+.+|...+.++.+.+-..|.+|++.++++|.|..+..-...
T Consensus        10 ~~t~~i~Ip~~~vg~iIG~~G~~I~~i~~~tg~~I~i~~~~~~~~~   55 (106)
T 2hh3_A           10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPE   55 (106)
T ss_dssp             --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSE
T ss_pred             CCEEEEEECHHHCCEEECCCCCCHHHHHHHCCEEEEEEECCCCCCC
T ss_conf             8749999686767857998973279998758618999856899983


No 99 
>>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} (A:25-57,A:307-395)
Probab=43.05  E-value=18  Score=14.98  Aligned_cols=71  Identities=10%  Similarity=0.093  Sum_probs=44.6

Q ss_pred             EEEECCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-------------HHCCCCEEEEECCCCCCHHHHH
Q ss_conf             998328806999823755444555114799999999999999873-------------1036863896033479888899
Q gi|254780751|r  371 VIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR-------------LRDLAGLIVVDFIDMEEKKNNR  437 (723)
Q Consensus       371 lvIe~TEALt~IDVNSG~~~~~~~~e~t~l~tNleAA~EIaRQlR-------------LRnlgGiIvIDFIdM~~~~~~~  437 (723)
                      +||++-|-.+..|+|.=+|.--    -....+|++-|.++..+++             .|+.|-|+-|||-.   ....+
T Consensus         5 ~~~~~g~g~~l~d~~g~~ylD~----~~g~~vnle~v~~~g~~l~~~L~~l~~~~v~~vRg~Glm~giel~~---~~~~~   77 (122)
T 1vef_A            5 LLIVRGQGARVWDAEGNEYIDC----VGGYGVAWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKE---KAAPY   77 (122)
T ss_dssp             SCEEEEEBTEEEETTSCEEEES----SHHHHTCHHHHHHHHHHHHHHHHTSCCTTEEEEEEETTEEEEEESS---CSHHH
T ss_pred             CEEEEEECCEEEECCCCEEEEC----CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECC---CCHHH
T ss_conf             3399836699997997999985----6078766147999748999999961798579852454899999717---75689


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999731
Q gi|254780751|r  438 SVEKKLKESLK  448 (723)
Q Consensus       438 ~v~~~l~~~l~  448 (723)
                      .+...++..+-
T Consensus        78 i~~~~~~~Gll   88 (122)
T 1vef_A           78 IARLEKEHRVL   88 (122)
T ss_dssp             HHHHHHHHCEE
T ss_pred             HHHHHHHCCCE
T ss_conf             99999978976


No 100
>>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:)
Probab=42.64  E-value=18  Score=14.94  Aligned_cols=47  Identities=9%  Similarity=0.085  Sum_probs=39.6

Q ss_pred             CCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCCCC
Q ss_conf             64310135769999987302379999999984887999847877886
Q gi|254780751|r  515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK  561 (723)
Q Consensus       515 ~~~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~l~~~  561 (723)
                      ....+.+.+|.....++.+.+-..|.+|++.+++.|.|..+..-...
T Consensus        13 ~~~~~~i~ip~~~vg~iIG~~G~~I~~I~~~tga~I~i~~~~~~~~~   59 (92)
T 1x4n_A           13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPE   59 (92)
T ss_dssp             CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSE
T ss_pred             CCEEEEEEECHHHCCEEECCCCHHHHHHHHHCCCEEEECCCCCCCCC
T ss_conf             85899999996752703997973189999970968998788999983


No 101
>>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} (A:)
Probab=41.01  E-value=11  Score=16.41  Aligned_cols=41  Identities=15%  Similarity=0.211  Sum_probs=35.6

Q ss_pred             CCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCC
Q ss_conf             31013576999998730237999999998488799984787
Q gi|254780751|r  517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE  557 (723)
Q Consensus       517 ~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~  557 (723)
                      -...+.+|.....++.+.+-..+.+|++.+|++|.|..+..
T Consensus         5 ~t~~i~Vp~~~~~~iIG~~G~~I~~I~~~tg~~I~i~~~~~   45 (71)
T 1vig_A            5 DYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSE   45 (71)
T ss_dssp             EEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCS
T ss_pred             EEEEEEECHHHHHHCCCCCCHHHHHHHHHHCCEEEECCCCC
T ss_conf             89999999887423279999029999997099899689878


No 102
>>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=40.54  E-value=17  Score=15.18  Aligned_cols=22  Identities=27%  Similarity=0.338  Sum_probs=14.4

Q ss_pred             CCCCCCEEEEEEECCCCCCCCC
Q ss_conf             0688857999840333234564
Q gi|254780751|r  173 VIKNRQILLVQIVKEERGNKGA  194 (723)
Q Consensus       173 ~lk~gq~ilVQV~ke~~~~Kga  194 (723)
                      -|++|+.|||+...+....||-
T Consensus        53 WIk~GD~VlV~~~~~~~k~k~d   74 (111)
T 2dgy_A           53 WIKRGDFLIVDPIEEGEKVKAE   74 (111)
T ss_dssp             CCCSSCEEEEEECSSCSSCCEE
T ss_pred             EEECCCEEEEEEHHHCCCCEEE
T ss_conf             7945999999873546873499


No 103
>>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} (A:)
Probab=40.12  E-value=20  Score=14.68  Aligned_cols=52  Identities=15%  Similarity=0.100  Sum_probs=41.6

Q ss_pred             CCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCCCCC-EEE
Q ss_conf             3643101357699999873023799999999848879998478778863-389
Q gi|254780751|r  514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL-FYI  565 (723)
Q Consensus       514 ~~~~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~l~~~~-f~I  565 (723)
                      .....+.+.+|...+.+|.+.+-..|.+|++.+|++|.|..+..-..+. +.|
T Consensus        11 ~~~~~~~i~Vp~~~~g~iIG~~G~~i~~I~~~tg~~I~i~~~~~~~~~~~v~i   63 (89)
T 1j5k_A           11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITI   63 (89)
T ss_dssp             CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEE
T ss_pred             CCEEEEEEEECHHHCCEEECCCCHHHHHHHHHHCCEEEECCCCCCCCCCEEEE
T ss_conf             98489999998675682499797189999998799899747889998536999


No 104
>>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I KH domains, fragIle X mental retardation protein, RNA binding protein; 1.90A {Homo sapiens} PDB: 2fmr_A (A:1-64)
Probab=38.88  E-value=21  Score=14.55  Aligned_cols=40  Identities=13%  Similarity=-0.027  Sum_probs=35.4

Q ss_pred             CCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECC
Q ss_conf             3101357699999873023799999999848879998478
Q gi|254780751|r  517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI  556 (723)
Q Consensus       517 ~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~  556 (723)
                      ....+.+|++...++.+..-..|.+|.+.+|++|.+..++
T Consensus         4 ~t~~i~Vp~~~vg~iIGkgG~~I~~I~~~tga~I~i~d~~   43 (64)
T 2qnd_A            4 FHEQFIVREDLXGLAIGTHGANIQQARKVPGVTAIDLDED   43 (64)
T ss_dssp             CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEETT
T ss_pred             EEEEEEECHHHHHHHHCCCCHHHHHHHHHCCEEEEECCCC
T ss_conf             0799999988986655876088999998567368723787


No 105
>>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural genomics, NPPSFA; 2.05A {Aquifex aeolicus VF5} PDB: 2ywf_A* 2ywg_A* 2ywh_A* (A:1-187)
Probab=37.76  E-value=22  Score=14.43  Aligned_cols=71  Identities=24%  Similarity=0.293  Sum_probs=54.0

Q ss_pred             EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             06999823755444555114799999999999999873103686389603347988889999999999731278728998
Q gi|254780751|r  378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG  457 (723)
Q Consensus       378 ALt~IDVNSG~~~~~~~~e~t~l~tNleAA~EIaRQlRLRnlgGiIvIDFIdM~~~~~~~~v~~~l~~~l~~D~~~~~v~  457 (723)
                      ||.+||.+.|-.               ..-.++.+|++..++-=|+||-=||.. ..+...+.+.+++.++.+.+.+...
T Consensus       100 allvvda~~g~~---------------~~t~~~~~~~~~~~~p~ivviNKiD~~-~~~~~~~~~~~~~~~~~~~~~ii~i  163 (187)
T 2ywe_A          100 ALLLIDASQGIE---------------AQTVANFWKAVEQDLVIIPVINKIDLP-SADVDRVKKQIEEVLGLDPEEAILA  163 (187)
T ss_dssp             EEEEEETTTBCC---------------HHHHHHHHHHHHTTCEEEEEEECTTST-TCCHHHHHHHHHHTSCCCGGGCEEC
T ss_pred             EEEEEECCCCCC---------------CCHHHHHHHHHHCCCCEEEEEECCCCC-CCCHHHHHHHHHHHHCCCCHHEEEE
T ss_conf             999995899865---------------012999999998799779999896578-7799999999999868992352676


Q ss_pred             -EECCCCE
Q ss_conf             -6048614
Q gi|254780751|r  458 -AISNFGL  464 (723)
Q Consensus       458 -~it~lGL  464 (723)
                       ..+..|+
T Consensus       164 SA~~g~gi  171 (187)
T 2ywe_A          164 SAKEGIGI  171 (187)
T ss_dssp             BTTTTBSH
T ss_pred             ECCCCCCH
T ss_conf             62058498


No 106
>>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} (A:)
Probab=36.32  E-value=11  Score=16.57  Aligned_cols=43  Identities=2%  Similarity=0.059  Sum_probs=36.9

Q ss_pred             CCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCC
Q ss_conf             3101357699999873023799999999848879998478778
Q gi|254780751|r  517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA  559 (723)
Q Consensus       517 ~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~l~  559 (723)
                      -.+.+.+|.....+|.+.+-..|.+|++.++++|.|..+....
T Consensus         7 ~t~~i~Vp~~~~g~iIGk~G~~ik~I~~~tg~~I~i~~~~~~~   49 (107)
T 2hh2_A            7 GEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPN   49 (107)
T ss_dssp             CCEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTT
T ss_pred             CEEEEEECHHHCCEEECCCCHHHHHHHHHCCEEEEEECCCCCC
T ss_conf             7699998956502247939703888752437399983267888


No 107
>>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} (A:22-53,A:321-426)
Probab=36.30  E-value=23  Score=14.28  Aligned_cols=78  Identities=12%  Similarity=0.282  Sum_probs=49.9

Q ss_pred             EEEECCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---------------HHCCCCEEEEECCCCCCHHH
Q ss_conf             998328806999823755444555114799999999999999873---------------10368638960334798888
Q gi|254780751|r  371 VIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR---------------LRDLAGLIVVDFIDMEEKKN  435 (723)
Q Consensus       371 lvIe~TEALt~IDVNSG~~~~~~~~e~t~l~tNleAA~EIaRQlR---------------LRnlgGiIvIDFIdM~~~~~  435 (723)
                      +||++-|-.+..|+|--+|.--    -..+.+|+|-+.++..+|+               .|+.|-++-|+|.+-+..+.
T Consensus         4 ~~~~~~~g~~~~d~~g~ryld~----~~g~~~~~e~v~~~g~~l~~~L~~l~~~~p~V~dvRG~GLm~~iel~~~~~~~~   79 (138)
T 1sff_A            4 IFADRAENCRVWDVEGREYLDF----AGGIAVLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNK   79 (138)
T ss_dssp             EEEEEEEBTEEEETTCCEEEES----SHHHHTCHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTS
T ss_pred             CEEEEEECCEEEECCCCEEEEC----CCCHHHHCHHHHCCHHHHHHHHHHHHHHCCCEEEEEEECEEEEEEEECCCCCCC
T ss_conf             4299976399996997999985----728886401221001234566678898689637897445499999942666677


Q ss_pred             -HHHHHHHHHHHHHHCCC
Q ss_conf             -99999999997312787
Q gi|254780751|r  436 -NRSVEKKLKESLKKDRA  452 (723)
Q Consensus       436 -~~~v~~~l~~~l~~D~~  452 (723)
                       ...+...+...+..-..
T Consensus        80 ~~~~~~~~i~~~~~~~Gv   97 (138)
T 1sff_A           80 PDAKLTAEIVARARDKGL   97 (138)
T ss_dssp             BCHHHHHHHHHHHHHTTE
T ss_pred             CCHHHHHHHHHHHHHCCC
T ss_conf             569999999999997898


No 108
>>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=36.27  E-value=7.4  Score=17.65  Aligned_cols=41  Identities=7%  Similarity=0.133  Sum_probs=35.7

Q ss_pred             CCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCC
Q ss_conf             31013576999998730237999999998488799984787
Q gi|254780751|r  517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE  557 (723)
Q Consensus       517 ~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~  557 (723)
                      -.+.+.+|.....+|.+.+...|.+|++.+|+.|.|..+..
T Consensus        17 ~~~~i~Vp~~~~g~iIG~~G~~I~~I~~~tg~~I~i~~~~~   57 (94)
T 2cte_A           17 ASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDD   57 (94)
T ss_dssp             EEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTS
T ss_pred             EEEEEEECHHHHHHHCCCCCHHHHHHHHHHCCEEEECCCCC
T ss_conf             78999999899967608896519999998298899789999


No 109
>>2gez_B L-asparaginase beta subunit; isoaspartyl aminopeptidase, NTN-hydrolase, autoproteolysis, taspase, sodium binding; 2.60A {Lupinus luteus} (B:1-112)
Probab=34.51  E-value=21  Score=14.47  Aligned_cols=26  Identities=8%  Similarity=0.165  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf             69999999842221436786499832
Q gi|254780751|r  350 GIEVQLDSLHQTEVTLPSRGYVIINQ  375 (723)
Q Consensus       350 ~ie~~i~~~~~~~V~L~sGG~lvIe~  375 (723)
                      ..++.++.++++...--.||-|+++.
T Consensus        76 ~~~~A~~~~i~~~~~~~~~G~Ia~~~  101 (112)
T 2gez_B           76 SLKEAADFVIHERTPKGTVGLIAVSA  101 (112)
T ss_dssp             CHHHHHHHHHHTSSCTTSEEEEEEET
T ss_pred             CHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             98999999998407578607999927


No 110
>>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=33.31  E-value=14  Score=15.79  Aligned_cols=16  Identities=31%  Similarity=0.785  Sum_probs=6.2

Q ss_pred             HCCCCCCCCCEEEEEC
Q ss_conf             0023675465378606
Q gi|254780751|r  480 TTKVCTYCKGAGYIRS  495 (723)
Q Consensus       480 ~~~~c~~c~g~g~~~~  495 (723)
                      ...+|+.|+|.|+++.
T Consensus        80 ~~~~C~~C~G~G~v~~   95 (104)
T 2ctt_A           80 IISPCVVCRGAGQAKQ   95 (104)
T ss_dssp             CSSCCSSSSSCSEECC
T ss_pred             CCCCCCCCCCCEEEEE
T ss_conf             7898989889606873


No 111
>>2k3v_A Tetraheme cytochrome C-type; multihaem cytochromes, redox proteins, electron transport, iron, metal-binding, periplasm, transport; HET: HEM; NMR {Shewanella frigidimarina} (A:)
Probab=32.25  E-value=11  Score=16.50  Aligned_cols=15  Identities=20%  Similarity=0.434  Sum_probs=7.4

Q ss_pred             CCCCCCCCEEEEECC
Q ss_conf             236754653786061
Q gi|254780751|r  482 KVCTYCKGAGYIRSQ  496 (723)
Q Consensus       482 ~~c~~c~g~g~~~~~  496 (723)
                      +.|+.|+|+|++...
T Consensus        33 ~~C~~C~G~G~~~~~   47 (86)
T 2k3v_A           33 EQCQSCHGSLAEMDD   47 (86)
T ss_dssp             HHTSSSSCCGGGSCT
T ss_pred             CHHHHHHHHHHHCCC
T ss_conf             340776616876034


No 112
>>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, structural genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718} (A:32-106)
Probab=32.21  E-value=26  Score=13.84  Aligned_cols=37  Identities=14%  Similarity=-0.041  Sum_probs=28.7

Q ss_pred             CCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCC
Q ss_conf             287879899783638823135327897713022213712
Q gi|254780751|r   39 KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD   77 (723)
Q Consensus        39 ~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~   77 (723)
                      +|+.+.|.|+.|.+  +.|=|=+..+..+.|+.+.+.+-
T Consensus         2 ~~~l~~AvV~~v~~--~~a~v~~~~g~~~~l~~~~l~wa   38 (75)
T 3d0f_A            2 SDDILAAVVLSATP--GAVEAFRKNGETIRITGDGLKAA   38 (75)
T ss_dssp             TTTCEEEEEEEEET--TEEEEEETTSCEEEECGGGGSTT
T ss_pred             CCCEEEEEEEEECC--CEEEEEECCCCEEEEEHHHHHHH
T ss_conf             58906899999668--81899976997799808996678


No 113
>>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:291-311,A:394-430)
Probab=31.09  E-value=27  Score=13.72  Aligned_cols=35  Identities=17%  Similarity=0.308  Sum_probs=22.9

Q ss_pred             CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             23675465378606114689988788999730364
Q gi|254780751|r  482 KVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA  516 (723)
Q Consensus       482 ~~c~~c~g~g~~~~~~~~~~~~~r~i~~~~~~~~~  516 (723)
                      -.||.|.|.|.-.-++.-..-|+..|++......+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~GII~~LeRRY~ET~S   36 (58)
T 2r6f_A            2 GACPDCDGLGAKLEVDLDLVGVIPNVERRYRETSS   36 (58)
T ss_dssp             TBCTTTTSCCEEEEECHHHHCHHHHHHHHHHHCCC
T ss_pred             CCCCHHHCCCCEEEECHHHCCCCCCHHHHHHHHCC
T ss_conf             63842332541687358880652327888887307


No 114
>>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} (7:1-289)
Probab=29.44  E-value=29  Score=13.53  Aligned_cols=78  Identities=17%  Similarity=0.206  Sum_probs=57.9

Q ss_pred             EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             06999823755444555114799999999999999873103686389603347988889999999999731278728998
Q gi|254780751|r  378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG  457 (723)
Q Consensus       378 ALt~IDVNSG~~~~~~~~e~t~l~tNleAA~EIaRQlRLRnlgGiIvIDFIdM~~~~~~~~v~~~l~~~l~~D~~~~~v~  457 (723)
                      |+.+||-..|-.               ...++..+|++.+++.=+++|-=||.. ..+...+...+++.|..+...+++.
T Consensus       109 ailVVdA~~Gv~---------------~qT~~~~~~a~~~~~p~i~~iNK~D~~-~~~~~~~~~ei~~~l~~~~~~~~~p  172 (289)
T 2rdo_7          109 AVMVYCAVGGVQ---------------PQSETVWRQANKYKVPRIAFVNKMDRM-GANFLKVVNQIKTRLGANPVPLQLA  172 (289)
T ss_pred             EEEEEECCCCCC---------------HHHHHHHHHHHHCCCCEEEEEECCCCC-CCCHHHHHHHHHHHHCCCCCCEECC
T ss_conf             799997898864---------------758999999987699869997330245-7778999999999868983211523


Q ss_pred             EECCC---CEEEEECCC
Q ss_conf             60486---148985156
Q gi|254780751|r  458 AISNF---GLLEMSRQR  471 (723)
Q Consensus       458 ~it~l---GLlEltRkR  471 (723)
                      -...-   |++.+...+
T Consensus       173 i~~~~~~~g~v~~~~~~  189 (289)
T 2rdo_7          173 IGAEEHFTGVVDLVKMK  189 (289)
T ss_pred             CCCCCCEEEEEEEHHHH
T ss_conf             34566516999713331


No 115
>>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor-SN, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} (A:25-107)
Probab=29.15  E-value=29  Score=13.50  Aligned_cols=34  Identities=35%  Similarity=0.564  Sum_probs=23.0

Q ss_pred             CCCEEEEEEEEECCC-CCEEEEEECCCCCCCCCHHHC
Q ss_conf             287879899783638-823135327897713022213
Q gi|254780751|r   39 KGNIYLAKVTRVEPS-LQAAFVDYGGNRHGFLPFLEI   74 (723)
Q Consensus        39 ~GnIY~G~V~~V~p~-lqAAFVdiG~~k~gFL~~~ei   74 (723)
                      -|.-|.|+|.+|.++ .+-=|||||.-  ...+.++|
T Consensus        41 d~~wyRa~I~~i~~~~~~V~fvDyGn~--~~v~~~~l   75 (83)
T 2wac_A           41 DNQWYRAKVERVQGSNATVLYIDYGNK--ETLPTNRL   75 (83)
T ss_dssp             TCCEEEEEEEEEETTEEEEEETTTCCE--EEEEGGGE
T ss_pred             CCCEEEEEEEEECCCCEEEEEEECCCE--EEEEHHHH
T ss_conf             892889999981699569999812982--99878998


No 116
>>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} (B:)
Probab=29.07  E-value=29  Score=13.49  Aligned_cols=88  Identities=9%  Similarity=0.131  Sum_probs=68.4

Q ss_pred             HHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCCHHHHHCCCCCCCCCEEEE
Q ss_conf             73103686389603347988889999999999731278728998604861489851566630112100236754653786
Q gi|254780751|r  414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI  493 (723)
Q Consensus       414 lRLRnlgGiIvIDFIdM~~~~~~~~v~~~l~~~l~~D~~~~~v~~it~lGLlEltRkR~r~sl~e~~~~~c~~c~g~g~~  493 (723)
                      +.....+|+.||.+..--...+-..+.+.+.+++.....+.-|..+|..                               
T Consensus         5 ~~~~~~~~~~vi~~~g~L~~~~~~~~~~~l~~~~~~~~~~~vilDls~v-------------------------------   53 (116)
T 1th8_B            5 IDLEVKQDVLIVRLSGELDHHTAEELREQVTDVLENRAIRHIVLNLGQL-------------------------------   53 (116)
T ss_dssp             EEEEEETTEEEEEEEEEESHHHHHHHHHHHHHHHHSSCCCEEEEEEEEE-------------------------------
T ss_pred             EEEEEECCEEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCC-------------------------------
T ss_conf             8899989999999999998799999999999999608996899997798-------------------------------


Q ss_pred             ECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf             061146899887889997303643101357699999873
Q gi|254780751|r  494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL  532 (723)
Q Consensus       494 ~~~~~~~~~~~r~i~~~~~~~~~~~i~v~~~~~va~~ll  532 (723)
                      ...++.+...+..+.+........-+.+.+++.+...+.
T Consensus        54 ~~iDssg~~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~   92 (116)
T 1th8_B           54 TFMDSSGLGVILGRYKQIKNVGGQMVVCAVSPAVKRLFD   92 (116)
T ss_dssp             EEECHHHHHHHHHHHHHHHHTTCCEEEESCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf             623879999999999999968998999978999999999


No 117
>>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, periplasm, translation; 2.80A {Escherichia coli K12} PDB: 3deg_C* (D:1-185)
Probab=28.31  E-value=30  Score=13.40  Aligned_cols=71  Identities=18%  Similarity=0.252  Sum_probs=52.4

Q ss_pred             EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCE-EE
Q ss_conf             06999823755444555114799999999999999873103686389603347988889999999999731278728-99
Q gi|254780751|r  378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV-QV  456 (723)
Q Consensus       378 ALt~IDVNSG~~~~~~~~e~t~l~tNleAA~EIaRQlRLRnlgGiIvIDFIdM~~~~~~~~v~~~l~~~l~~D~~~~-~v  456 (723)
                      |+.+||...|-.               ....++.++++..++-=+++|-=+|.. ..+...+.+.+++.++...+.+ -+
T Consensus        98 ailVvda~~g~~---------------~qt~~~~~~~~~~~~p~ivviNK~D~~-~~~~~~~~~~i~~~~~~~~~~vv~i  161 (185)
T 3cb4_D           98 ALLVVDAGQGVE---------------AQTLANCYTAMEMDLEVVPVLNKIDLP-AADPERVAEEIEDIVGIDATDAVRC  161 (185)
T ss_dssp             EEEEEETTTCCC---------------THHHHHHHHHHHTTCEEEEEEECTTST-TCCHHHHHHHHHHHTCCCCTTCEEE
T ss_pred             EEEEEECCCCCC---------------CCHHHHHHHHHHCCCCEEEEEECCCCC-CCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             899997998855---------------221999999998799879998887588-8899999999999868994110234


Q ss_pred             EEECCCCE
Q ss_conf             86048614
Q gi|254780751|r  457 GAISNFGL  464 (723)
Q Consensus       457 ~~it~lGL  464 (723)
                      +..+.-|+
T Consensus       162 SA~~g~gi  169 (185)
T 3cb4_D          162 SAKTGVGV  169 (185)
T ss_dssp             CTTTCTTH
T ss_pred             ECCCCCCH
T ss_conf             32068296


No 118
>>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein structure initiative; 1.85A {Shewanella oneidensis mr-1} (A:1-73)
Probab=26.73  E-value=32  Score=13.21  Aligned_cols=21  Identities=29%  Similarity=0.227  Sum_probs=17.4

Q ss_pred             EEEEEEECCCCCEEEEEECCC
Q ss_conf             989978363882313532789
Q gi|254780751|r   44 LAKVTRVEPSLQAAFVDYGGN   64 (723)
Q Consensus        44 ~G~V~~V~p~lqAAFVdiG~~   64 (723)
                      -|+|..|.+..+-|.||++.-
T Consensus        27 P~kIveI~~~~~~A~Vd~~Gv   47 (73)
T 3d3r_A           27 PSQVVAVDNERQSVTVDTLGV   47 (73)
T ss_dssp             CEEEEEEETTTTEEEEEETTE
T ss_pred             CEEEEEECCCCCEEEEECCCE
T ss_conf             549999919988899967995


No 119
>>2vnu_D Exosome complex exonuclease RRP44; rRNA processing, RNA degradation, cytoplasm, RNA-binding, RNA processing, DIS3P, nucleus, hydrolase; HET: 1PE; 2.30A {Saccharomyces cerevisiae} (D:671-760)
Probab=26.07  E-value=33  Score=13.13  Aligned_cols=36  Identities=14%  Similarity=0.007  Sum_probs=28.9

Q ss_pred             EEEEEEEEECCCCCEEEEEEC-CCCCCCCCHHHCCCCCC
Q ss_conf             879899783638823135327-89771302221371210
Q gi|254780751|r   42 IYLAKVTRVEPSLQAAFVDYG-GNRHGFLPFLEIHPDYY   79 (723)
Q Consensus        42 IY~G~V~~V~p~lqAAFVdiG-~~k~gFL~~~ei~~~y~   79 (723)
                      +|-|.|+.|-+.  +.||.+- .+-.|+.|++++.-||+
T Consensus         2 ~~~g~Is~V~~~--Gi~V~l~~~giEG~V~l~~l~~d~~   38 (90)
T 2vnu_D            2 TETGYVIKVFNN--GIVVLVPKFGVEGLIRLDNLTEDPN   38 (90)
T ss_dssp             EEEEEEEEEETT--EEEEEETTTTEEEEEEHHHHCSCGG
T ss_pred             EEEEEEEEEEEC--EEEEEEECCCCEEEEECCCCCCCCC
T ss_conf             489999999957--2999980897489998011799854


No 120
>>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus} (A:1-64)
Probab=25.98  E-value=31  Score=13.34  Aligned_cols=20  Identities=20%  Similarity=0.370  Sum_probs=15.6

Q ss_pred             CCCCCCCCEEEEECCHHHHH
Q ss_conf             23675465378606114689
Q gi|254780751|r  482 KVCTYCKGAGYIRSQSSVAL  501 (723)
Q Consensus       482 ~~c~~c~g~g~~~~~~~~~~  501 (723)
                      ..||.|+..|.--...++-.
T Consensus         2 ~~CP~Cg~~G~~V~~~TVk~   21 (64)
T 2hu9_A            2 MRCPECSTEGWRVLPLTVGA   21 (64)
T ss_dssp             CBCTTTCCBCEEECHHHHHH
T ss_pred             CCCCCCCCCCEEECHHHHHH
T ss_conf             75887887675810888998


No 121
>>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=25.51  E-value=25  Score=13.94  Aligned_cols=35  Identities=31%  Similarity=0.557  Sum_probs=23.3

Q ss_pred             CCCCEEEEEEEEECCC--CCEEEEEECCCCCCCCCHHHC
Q ss_conf             4287879899783638--823135327897713022213
Q gi|254780751|r   38 IKGNIYLAKVTRVEPS--LQAAFVDYGGNRHGFLPFLEI   74 (723)
Q Consensus        38 ~~GnIY~G~V~~V~p~--lqAAFVdiG~~k~gFL~~~ei   74 (723)
                      .-|..|.|+|..+.++  ..--|||||....  .++++|
T Consensus        45 ~d~~w~Ra~I~~~~~~~~~~V~~iD~G~~~~--v~~~~l   81 (110)
T 2diq_A           45 TNGSWYRARVLGTLENGNLDLYFVDFGDNGD--CPLKDL   81 (110)
T ss_dssp             TTCSCEEEEECCCCSSSCEEEEETTTCCEEE--ECGGGC
T ss_pred             CCCCEEEEEEEEECCCCEEEEEEEEECCEEE--EEHHHH
T ss_conf             7991999999997799979999995199899--878998


No 122
>>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI, protein structure initiative; 2.30A {Methanothermobacterthermautotrophicus} (A:85-160)
Probab=24.34  E-value=36  Score=12.92  Aligned_cols=32  Identities=16%  Similarity=0.307  Sum_probs=23.1

Q ss_pred             CCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCC
Q ss_conf             6042878798997836388231353278977130
Q gi|254780751|r   36 KQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFL   69 (723)
Q Consensus        36 ~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL   69 (723)
                      ..-.|.+=-|.|.+-..  ..+|||+|..+.+.+
T Consensus        15 ~~e~~~yREGvv~~~~~--~gt~VdvGl~~~v~i   46 (76)
T 1k3r_A           15 KPVTGEYRQGLTVKRVK--KGTLVDIGADKLALC   46 (76)
T ss_dssp             SCCTTCEEEEEEEEECS--SSEEEESSSSCEEEC
T ss_pred             CCCCCCCCCEEEEECCC--CCEEEECCCCCEECC
T ss_conf             76744642358875268--963785798740214


No 123
>>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} (A:136-229)
Probab=24.26  E-value=36  Score=12.91  Aligned_cols=39  Identities=21%  Similarity=0.108  Sum_probs=33.7

Q ss_pred             CCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCC
Q ss_conf             013576999998730237999999998488799984787
Q gi|254780751|r  519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE  557 (723)
Q Consensus       519 i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~  557 (723)
                      ..+.+|++....+.+..-..+.+|++++|++|.+..+..
T Consensus         3 ~~i~vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~   41 (94)
T 2ba0_A            3 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQNGL   41 (94)
T ss_dssp             EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECTTSE
T ss_pred             EEEEECCCEECEEEECCCEEEHHHCCCCCEEEEEECCCE
T ss_conf             685144535450550684520012146686999967858


No 124
>>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} (A:)
Probab=24.15  E-value=36  Score=12.89  Aligned_cols=40  Identities=13%  Similarity=0.141  Sum_probs=32.4

Q ss_pred             CCCCEEEEEEEEECCCCCEEEEEEC-CCCCCCCCHHHCCCC
Q ss_conf             4287879899783638823135327-897713022213712
Q gi|254780751|r   38 IKGNIYLAKVTRVEPSLQAAFVDYG-GNRHGFLPFLEIHPD   77 (723)
Q Consensus        38 ~~GnIY~G~V~~V~p~lqAAFVdiG-~~k~gFL~~~ei~~~   77 (723)
                      .....+.|+|+.--+.=.=-||.-. .++.-|+|++.|+.+
T Consensus         4 ~~~~~~~G~Vk~f~~~kGfGFI~~~~g~~dif~h~s~i~~~   44 (79)
T 1h95_A            4 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKN   44 (79)
T ss_dssp             CCEEEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSC
T ss_pred             HHCCCCEEEEEEEECCCCEEEEEECCCCCCEEEEHHHHCCC
T ss_conf             21475108999997999989998689986799984993346


No 125
>>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} (A:220-303)
Probab=23.97  E-value=36  Score=12.87  Aligned_cols=16  Identities=19%  Similarity=0.335  Sum_probs=11.8

Q ss_pred             CCCEEEEEEECCCCCC
Q ss_conf             2880699982375544
Q gi|254780751|r  375 QTEALVSIDVNSGRST  390 (723)
Q Consensus       375 ~TEALt~IDVNSG~~~  390 (723)
                      .|.+++++|+.||+..
T Consensus        57 ~s~sivAld~~TG~~~   72 (84)
T 1w6s_A           57 WTMTIFGRDADTGEAK   72 (84)
T ss_dssp             TSSEEEEEETTTCCEE
T ss_pred             CCCCCEEECCCCCCEE
T ss_conf             4354121243552003


No 126
>>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} (A:1-80)
Probab=23.07  E-value=38  Score=12.75  Aligned_cols=18  Identities=11%  Similarity=0.012  Sum_probs=14.0

Q ss_pred             HHHHCCCCCCCCCEEEEE
Q ss_conf             121002367546537860
Q gi|254780751|r  477 LESTTKVCTYCKGAGYIR  494 (723)
Q Consensus       477 ~e~~~~~c~~c~g~g~~~  494 (723)
                      .+.+...|..||+.++|.
T Consensus         5 ~~lv~~~C~~CHs~~~i~   22 (80)
T 1jmx_A            5 PSLLQNKCMGCHIPEGND   22 (80)
T ss_dssp             HHHHHHHHBTTBCEEETT
T ss_pred             HHHHHHHHHHCCCCCCCC
T ss_conf             899984433303855577


No 127
>>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Shewanella oneidensis mr-1} (A:)
Probab=23.02  E-value=38  Score=12.75  Aligned_cols=34  Identities=12%  Similarity=-0.017  Sum_probs=27.7

Q ss_pred             EEEEEEECCCCCEEEEEE-CCCCCCCCCHHHCCCC
Q ss_conf             989978363882313532-7897713022213712
Q gi|254780751|r   44 LAKVTRVEPSLQAAFVDY-GGNRHGFLPFLEIHPD   77 (723)
Q Consensus        44 ~G~V~~V~p~lqAAFVdi-G~~k~gFL~~~ei~~~   77 (723)
                      .|+|+..-+.-.--||.- +.+..-|+|++.+..+
T Consensus         2 ~G~Vk~f~~~kGfGFI~~d~~~~dif~h~s~l~~~   36 (74)
T 2kcm_A            2 KGKVVSYLAAKKYGFIQGDDGESYFLHFSELLDKK   36 (74)
T ss_dssp             EEEEEEEETTTTEEEEEETTSCEECCCGGGSSCSG
T ss_pred             EEEEEEEECCCCEEEEECCCCCEEEEEHHHHCCCC
T ss_conf             38999998999866783699967999947703478


No 128
>>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, 2Fe-2S, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-binding; HET: CHD HEM GOL; 1.60A {Homo sapiens} PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 2pnj_A* 2po5_A* 2po7_A* (A:1-164,A:308-359)
Probab=22.71  E-value=38  Score=12.71  Aligned_cols=13  Identities=23%  Similarity=0.483  Sum_probs=8.2

Q ss_pred             HHHHHCCCCCCCC
Q ss_conf             1121002367546
Q gi|254780751|r  476 VLESTTKVCTYCK  488 (723)
Q Consensus       476 l~e~~~~~c~~c~  488 (723)
                      ....++..||.|.
T Consensus       188 ~~~~~~~~~~~~~  200 (216)
T 3hcn_A          188 CSKQLTLSCPLCV  200 (216)
T ss_dssp             SCGGGGSCCTTCC
T ss_pred             CCCCCCCCCCCCC
T ss_conf             7745688899988


No 129
>>2vy9_A Anti-sigma-factor antagonist; gene regulation, RSBS, stressosome, STAS domain, bacillus subtilis; 2.3A {Moorella thermoacetica} (A:)
Probab=22.67  E-value=38  Score=12.70  Aligned_cols=89  Identities=11%  Similarity=0.087  Sum_probs=62.9

Q ss_pred             HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCCHHHHHCCCCCCCCCEEE
Q ss_conf             87310368638960334798888999999999973127872899860486148985156663011210023675465378
Q gi|254780751|r  413 QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY  492 (723)
Q Consensus       413 QlRLRnlgGiIvIDFIdM~~~~~~~~v~~~l~~~l~~D~~~~~v~~it~lGLlEltRkR~r~sl~e~~~~~c~~c~g~g~  492 (723)
                      .+.+...+|+.||.|-.=-...+-..+.+.+.+.+...+.+.-|..+|..-                             
T Consensus         4 ~~~~~~~~~~~ii~~~g~l~~~~~~~~~~~l~~~~~~~~~~~vilD~s~v~-----------------------------   54 (123)
T 2vy9_A            4 RVPILKVDDYWVVAIEETLHDQSVIQFKEELLHNITGVAGKGLVIDISALE-----------------------------   54 (123)
T ss_dssp             --CCEEETTEEEEECCCCSCSHHHHHHHHHHHHHHTTSCCSEEEEECTTCS-----------------------------
T ss_pred             CCEEEEECCEEEEEEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC-----------------------------
T ss_conf             303899899999996789878999999999987531579869999755787-----------------------------


Q ss_pred             EECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf             6061146899887889997303643101357699999873
Q gi|254780751|r  493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL  532 (723)
Q Consensus       493 ~~~~~~~~~~~~r~i~~~~~~~~~~~i~v~~~~~va~~ll  532 (723)
                        ..++.++..+..+.+........-+.+.+++.+...|.
T Consensus        55 --~iDss~~~~L~~l~~~~~~~g~~l~l~~~~~~v~~~l~   92 (123)
T 2vy9_A           55 --VVDSFVTRVLIEISRLAELLGLPFVLTGIKPAVAITLT   92 (123)
T ss_dssp             --SCCHHHHHHHHHHHHHHHHTTCCEEEECCCHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf             --55989999999999999735985999948989999999


No 130
>>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} (I:156-251)
Probab=22.54  E-value=32  Score=13.22  Aligned_cols=39  Identities=15%  Similarity=0.166  Sum_probs=33.6

Q ss_pred             CCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCC
Q ss_conf             013576999998730237999999998488799984787
Q gi|254780751|r  519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE  557 (723)
Q Consensus       519 i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~  557 (723)
                      ..+.+|++...++.+..-..|..|++.+|++|.+.-+..
T Consensus         2 e~i~vp~~~vg~iIGkgG~~Ik~I~~~tg~~I~i~~~~~   40 (96)
T 2je6_I            2 IVIDIMPVKVPRVIGKNKSMYETLTSKSGCSIFVANNGR   40 (96)
T ss_dssp             CEEECCGGGHHHHHCGGGHHHHHHHTTC---CEECTTSE
T ss_pred             EEEEEECCCCCEEEECCCEEEEEECCCCCEEEEECCCCE
T ss_conf             626652565660575486888980577368999766357


No 131
>>1p1j_A Inositol-3-phosphate synthase; 1L-MYO-inositol 1-phosphate, NADH, isomerase, rossmann fold; HET: NAI; 1.70A {Saccharomyces cerevisiae} (A:92-135)
Probab=22.37  E-value=31  Score=13.29  Aligned_cols=23  Identities=26%  Similarity=0.551  Sum_probs=16.8

Q ss_pred             CCEEEEEECCCCCC---CCCHHHCCC
Q ss_conf             82313532789771---302221371
Q gi|254780751|r   54 LQAAFVDYGGNRHG---FLPFLEIHP   76 (723)
Q Consensus        54 lqAAFVdiG~~k~g---FL~~~ei~~   76 (723)
                      .||+=|-+|.+.+|   |.||+++-|
T Consensus        19 tqaSTv~lG~d~~G~ev~vPf~~lLP   44 (44)
T 1p1j_A           19 TQCSTLKLGIDAEGNDVYAPFNSLLP   44 (44)
T ss_dssp             HHHCEEEEEECTTSCEEEEEGGGSSC
T ss_pred             HHCCEEEECCCCCCCCCCCCHHHCCC
T ss_conf             10022420346678724663776178


No 132
>>2wjn_C Photosynthetic reaction center cytochrome C subunit; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_C* 1r2c_C* 1dxr_C* 2prc_C* 2i5n_C* 2wjm_C* 3d38_C* 3g7f_C* 3prc_C* 5prc_C* 6prc_C* 7prc_C* 2jbl_C* 1vrn_C* (C:93-251)
Probab=22.27  E-value=18  Score=15.02  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=13.3

Q ss_pred             HHHHHHHCCCCEEEEEECCCCEEEEECCCCCCCH
Q ss_conf             9997312787289986048614898515666301
Q gi|254780751|r  443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV  476 (723)
Q Consensus       443 l~~~l~~D~~~~~v~~it~lGLlEltRkR~r~sl  476 (723)
                      |...|-.|..-+.|.+.+.|-+++.+++--++++
T Consensus        98 ~~~fLl~d~~~irV~~~~alP~~~v~~~~~~~~i  131 (159)
T 2wjn_C           98 FTMFLANDKRQVRVVPQTALPLVGVSRGKERRPL  131 (159)
T ss_dssp             HHHHTSCSCSCCCCSCSSSSCBTTSSSGGGSCCT
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf             2666435853210047767876666666665316


No 133
>>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} (A:1-197)
Probab=21.53  E-value=40  Score=12.55  Aligned_cols=76  Identities=16%  Similarity=0.125  Sum_probs=44.8

Q ss_pred             EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEECCCCCCHH-HHHHHHHHHHHHH---HHCCC
Q ss_conf             0699982375544455511479999999999999987310368-63896033479888-8999999999973---12787
Q gi|254780751|r  378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA-GLIVVDFIDMEEKK-NNRSVEKKLKESL---KKDRA  452 (723)
Q Consensus       378 ALt~IDVNSG~~~~~~~~e~t~l~tNleAA~EIaRQlRLRnlg-GiIvIDFIdM~~~~-~~~~v~~~l~~~l---~~D~~  452 (723)
                      |+.+||...|-.               +...|..++++..++. -||+|-=+|.-... .+..+...+.+.+   .....
T Consensus        93 ailVvda~~g~~---------------~qT~e~~~~~~~~~i~~iiv~iNKmD~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
T 1d2e_A           93 CILVVAANDGPM---------------PQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (197)
T ss_dssp             EEEEEETTTCSC---------------HHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             EEEEEECCCCCC---------------HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             899988577875---------------63899999999729985899850566678489999999999999986099801


Q ss_pred             CEEEEEECCC-CEEEEE
Q ss_conf             2899860486-148985
Q gi|254780751|r  453 RVQVGAISNF-GLLEMS  468 (723)
Q Consensus       453 ~~~v~~it~l-GLlElt  468 (723)
                      .+.+.++|.+ |+.+..
T Consensus       158 ~v~~ipiSa~~G~~~~~  174 (197)
T 1d2e_A          158 ETPIIVGSALCALEQRD  174 (197)
T ss_dssp             TSCEEECCHHHHHTTCC
T ss_pred             HEEEEECCCCCCEECCC
T ss_conf             20189610542201358


No 134
>>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I KH domains, fragIle X mental retardation protein, RNA binding protein; 1.90A {Homo sapiens} PDB: 2fmr_A (A:65-144)
Probab=21.34  E-value=41  Score=12.52  Aligned_cols=42  Identities=14%  Similarity=0.184  Sum_probs=34.6

Q ss_pred             CCCCCCCHHHHHHHHCCHHHHHHHHHHHHCC-EEEEEECCCCC
Q ss_conf             1013576999998730237999999998488-79998478778
Q gi|254780751|r  518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGV-SINVVIGIELA  559 (723)
Q Consensus       518 ~i~v~~~~~va~~lln~kr~~l~~lE~~~~~-~I~i~~d~~l~  559 (723)
                      .+.+.+|...+..|.+..-..|.+|.+.+|+ .|.|..+.+..
T Consensus         4 t~~~~Ip~~~vg~iIGk~G~~I~~I~~~tGa~~i~i~~~~~~~   46 (80)
T 2qnd_A            4 EDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKN   46 (80)
T ss_dssp             EEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTC
T ss_pred             EEEECCCHHHHHHHCCCCCHHHHHHHHHHCCEEEEECCCCCCC
T ss_conf             6776055777766405686589998886198799964887788


No 135
>>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=21.04  E-value=41  Score=12.48  Aligned_cols=40  Identities=15%  Similarity=0.166  Sum_probs=28.3

Q ss_pred             CCCCCCCCHHHHHHHHCCHHHHHHHHHHHHC-CEEEEEECC
Q ss_conf             3101357699999873023799999999848-879998478
Q gi|254780751|r  517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFG-VSINVVIGI  556 (723)
Q Consensus       517 ~~i~v~~~~~va~~lln~kr~~l~~lE~~~~-~~I~i~~d~  556 (723)
                      ....+.+|+....++.+.+...|.+|++.+| +.|.|-.+.
T Consensus        27 ~~~~i~Vp~~~~~~iIG~~G~~Ik~I~~~tg~~~I~~~~~~   67 (102)
T 2ctf_A           27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEGE   67 (102)
T ss_dssp             EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECSSS
T ss_pred             EEEEEEECHHHHHHHCCCCHHHHHHHHHHCCCEEEECCCCC
T ss_conf             79999808898847238862789999998398287469998


No 136
>>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} (A:1-79)
Probab=21.01  E-value=39  Score=12.63  Aligned_cols=19  Identities=16%  Similarity=0.156  Sum_probs=14.1

Q ss_pred             HHHHCCCCCCCCCEEEEEC
Q ss_conf             1210023675465378606
Q gi|254780751|r  477 LESTTKVCTYCKGAGYIRS  495 (723)
Q Consensus       477 ~e~~~~~c~~c~g~g~~~~  495 (723)
                      .+.+...|..||+.++|-.
T Consensus         4 ~~lv~~~C~~CHs~~~i~~   22 (79)
T 1pby_A            4 EEVLQNACAACHVQHEDGR   22 (79)
T ss_dssp             HHHHHHTGGGTSCBCTTSC
T ss_pred             HHHHHHHHHHCCCCCCCCC
T ss_conf             8999744344138666876


No 137
>>1zbr_A AAQ65385, conserved hypothetical protein; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Porphyromonas gingivalis W83} (A:146-204)
Probab=20.77  E-value=42  Score=12.44  Aligned_cols=28  Identities=14%  Similarity=0.061  Sum_probs=20.4

Q ss_pred             CCHHHHHHHHHHHHHHHH--CCCCCCCCCC
Q ss_conf             420356776999999984--2221436786
Q gi|254780751|r  342 PHPIFFRSGIEVQLDSLH--QTEVTLPSRG  369 (723)
Q Consensus       342 ~~~lf~~y~ie~~i~~~~--~~~V~L~sGG  369 (723)
                      .-|-+.+-.|+..+...|  ++.+||+.|+
T Consensus        25 RNp~ls~~~ie~~L~~~lG~~kviWL~~G~   54 (59)
T 1zbr_A           25 RNAGLSRTAIIDTLKESLGVSRVLSLRHGA   54 (59)
T ss_dssp             TSTTSCHHHHHHHHHHHSCCSEEEEESSCC
T ss_pred             CCCCCCHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             788756789999999861976478606888


No 138
>>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} (A:1-218)
Probab=20.68  E-value=42  Score=12.43  Aligned_cols=34  Identities=15%  Similarity=0.080  Sum_probs=28.4

Q ss_pred             HHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf             7310368638960334798888999999999973
Q gi|254780751|r  414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL  447 (723)
Q Consensus       414 lRLRnlgGiIvIDFIdM~~~~~~~~v~~~l~~~l  447 (723)
                      +.-+.-+|+..||.|++-....+..++..|.+.-
T Consensus       139 ~~~~a~~gil~iDEi~~~~~~~~~~ll~~le~~~  172 (218)
T 1g8p_A          139 LLARANRGYLYIDECNLLEDHIVDLLLDVAQSGE  172 (218)
T ss_dssp             HHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSE
T ss_pred             CEECCCCCEEEECCHHHHCHHHHHHHHHHHHHCE
T ss_conf             3230569878615587757999999999986143


No 139
>>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer; 1.17A {Bacillus caldolyticus} (A:)
Probab=20.68  E-value=42  Score=12.43  Aligned_cols=33  Identities=21%  Similarity=0.312  Sum_probs=28.1

Q ss_pred             EEEEEEECCCCCEEEEEECCCCCCCCCHHHCCC
Q ss_conf             989978363882313532789771302221371
Q gi|254780751|r   44 LAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHP   76 (723)
Q Consensus        44 ~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~   76 (723)
                      .|+|+..-+.-.=-||.--.+..-|+|.+.+..
T Consensus         3 ~G~Vk~f~~~kGfGFI~~d~g~d~~f~~~~~~~   35 (66)
T 1c9o_A            3 RGKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQG   35 (66)
T ss_dssp             EEEEEEEETTTTEEEEEETTEEEEEEEGGGBCS
T ss_pred             CEEEEEEECCCCEEEEEECCCCEEEEEEHHCCC
T ss_conf             819999979999899977699349999045450


No 140
>>3hvm_A Agmatine deiminase; hydrolase; 2.10A {Helicobacter pylori J99} PDB: 2cmu_A (A:140-198)
Probab=20.57  E-value=42  Score=12.42  Aligned_cols=28  Identities=18%  Similarity=0.139  Sum_probs=20.8

Q ss_pred             CCHHHHHHHHHHHHHHHH--CCCCCCCCCC
Q ss_conf             420356776999999984--2221436786
Q gi|254780751|r  342 PHPIFFRSGIEVQLDSLH--QTEVTLPSRG  369 (723)
Q Consensus       342 ~~~lf~~y~ie~~i~~~~--~~~V~L~sGG  369 (723)
                      .-|-+.+-.|+..+...|  ++.+||+.|.
T Consensus        25 RNp~lt~~~ie~~L~~~lG~~kviWL~~G~   54 (59)
T 3hvm_A           25 RNPHLNQNGIETMLKKELGAKQVLWYSYGY   54 (59)
T ss_dssp             TSTTSCHHHHHHHHHHHHCCSEEEEECCCC
T ss_pred             CCCCCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             387879999999999974997699967887


No 141
>>1c3g_A Heat shock protein 40; beta sheets, short helices; 2.70A {Saccharomyces cerevisiae} (A:1-79)
Probab=20.52  E-value=29  Score=13.57  Aligned_cols=13  Identities=15%  Similarity=-0.243  Sum_probs=4.9

Q ss_pred             CCCCCCCCEEEEE
Q ss_conf             2367546537860
Q gi|254780751|r  482 KVCTYCKGAGYIR  494 (723)
Q Consensus       482 ~~c~~c~g~g~~~  494 (723)
                      .+|+.|+|.|..+
T Consensus        24 ~~c~~c~g~~~~~   36 (79)
T 1c3g_A           24 IGRKGPHGASEKT   36 (79)
T ss_dssp             EEEEETTTEEEEE
T ss_pred             EEEECCCCCEEEE
T ss_conf             9961688740269


No 142
>>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori} (A:)
Probab=20.42  E-value=32  Score=13.27  Aligned_cols=90  Identities=12%  Similarity=0.044  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEE-ECCCCCCHHHHHHHHHHHHHHHH-HCCCCEEEEEECCCCEEEEECCCCCC-
Q ss_conf             7999999999999998731036863896-03347988889999999999731-27872899860486148985156663-
Q gi|254780751|r  398 TALQTNLEAAEEIARQLRLRDLAGLIVV-DFIDMEEKKNNRSVEKKLKESLK-KDRARVQVGAISNFGLLEMSRQRIRS-  474 (723)
Q Consensus       398 t~l~tNleAA~EIaRQlRLRnlgGiIvI-DFIdM~~~~~~~~v~~~l~~~l~-~D~~~~~v~~it~lGLlEltRkR~r~-  474 (723)
                      .+..-=++++.+.|+.-..+-+..+.|. -=.-.-.+..-+--...+.+.-. -..++..|-.+...+-    =+.=+. 
T Consensus         7 si~~~iv~~v~~~a~~~~~~~V~~V~l~IG~ls~V~p~~L~faf~~~~~~T~l~ega~L~i~~~p~~~~----C~~Cg~~   82 (119)
T 2kdx_A            7 SVVSSLIALCEEHAKKNQAHKIERVVVGIGERSAMDKSLFVSAFETFREESLVCKDAILDIVDEKVELE----CKDCSHV   82 (119)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCEEEEEEETTSCCCHHHHHHHHHHHGGGCTTTSSCCEEEEEECCEEE----CSSSSCE
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEE----CCCCCCE
T ss_conf             999999999999999859958999999988756408999999999996798445376899996386689----7789988


Q ss_pred             -CHHHHHCCCCCCCCCEE
Q ss_conf             -01121002367546537
Q gi|254780751|r  475 -SVLESTTKVCTYCKGAG  491 (723)
Q Consensus       475 -sl~e~~~~~c~~c~g~g  491 (723)
                       ++.+..+..||+|++..
T Consensus        83 ~~~~~~~~~~CP~Cgs~~  100 (119)
T 2kdx_A           83 FKPNALDYGVCEKCHSKN  100 (119)
T ss_dssp             ECSCCSTTCCCSSSSSCC
T ss_pred             ECCCCCCCCCCCCCCCCC
T ss_conf             534775177490978988


No 143
>>1acv_A DSBA; disulfide oxidoreductase, thioredoxin fold, redox-active center; 1.90A {Escherichia coli} (A:1-64,A:149-189)
Probab=20.19  E-value=16  Score=15.42  Aligned_cols=15  Identities=33%  Similarity=0.567  Sum_probs=9.2

Q ss_pred             CCCHHHHHCCCCCCC
Q ss_conf             630112100236754
Q gi|254780751|r  473 RSSVLESTTKVCTYC  487 (723)
Q Consensus       473 r~sl~e~~~~~c~~c  487 (723)
                      .+.+.|.|+-.||||
T Consensus        19 kpeVvEFFSy~CpHC   33 (105)
T 1acv_A           19 APQVLEFFSFFCPSC   33 (105)
T ss_dssp             CCSEEEEECTTCHHH
T ss_pred             CCEEEEEECCCCCCH
T ss_conf             977999988889340


No 144
>>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} (A:1-85)
Probab=20.09  E-value=17  Score=15.08  Aligned_cols=19  Identities=0%  Similarity=-0.241  Sum_probs=8.8

Q ss_pred             HCCCCCCCCCEEEEECCHH
Q ss_conf             0023675465378606114
Q gi|254780751|r  480 TTKVCTYCKGAGYIRSQSS  498 (723)
Q Consensus       480 ~~~~c~~c~g~g~~~~~~~  498 (723)
                      +..+|+.|.|.|++....+
T Consensus        25 i~~~c~~c~g~g~~~~~~~   43 (85)
T 2q2g_A           25 IKVTRKRFIEHKVRNEENI   43 (85)
T ss_dssp             EEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEECCCCEEEEEEE
T ss_conf             9986688779966877799


No 145
>>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=20.05  E-value=43  Score=12.34  Aligned_cols=51  Identities=12%  Similarity=-0.051  Sum_probs=38.9

Q ss_pred             CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCCCCCEEEE
Q ss_conf             431013576999998730237999999998488799984787788633897
Q gi|254780751|r  516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE  566 (723)
Q Consensus       516 ~~~i~v~~~~~va~~lln~kr~~l~~lE~~~~~~I~i~~d~~l~~~~f~Ie  566 (723)
                      ...+.+.+|+....++.+.+-..|.+|++.++..+...+++.-....+.|.
T Consensus        16 ~~~~~i~Vp~~~~g~iIG~~G~~I~~I~~~tg~~~I~~~~~~~~~~~i~I~   66 (95)
T 2ctj_A           16 IAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIR   66 (95)
T ss_dssp             SCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEE
T ss_pred             CEEEEEEECHHHHHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCCCEEEEE
T ss_conf             589999989898735089984689999997299189957988877537984


Done!