HHsearch results for GI: 254780751 and protein with PDBid: 1wi5_A

>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=97.30  E-value=0.00031  Score=46.99  Aligned_cols=86  Identities=19%  Similarity=0.151  Sum_probs=63.3

Q ss_pred             CCCCCCCEEEEEEEEECCCCCEEEEEEC-CCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             4604287879899783638823135327-897713022213712102898899999998886311111000000011122
Q gi|254780751|r   35 KKQIKGNIYLAKVTRVEPSLQAAFVDYG-GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVT  113 (723)
Q Consensus        35 ~~~~~GnIY~G~V~~V~p~lqAAFVdiG-~~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~  113 (723)
                      ..-..|.|+.|.|++|.+.  .+||++| .+-.||||..++..+.+-                                 
T Consensus        17 ~~l~~G~iv~G~V~~i~~~--G~~V~~g~~~~~G~l~~~e~~~~~~~---------------------------------   61 (119)
T 1wi5_A           17 EALKPGMLLTGTVSSLEDH--GYLVDIGVDGTRAFLPLLKAQEYIRQ---------------------------------   61 (119)
T ss_dssp             TTCCTTCEEEEEEEEECSS--EEEEECCCSSCEEEEEHHHHHHHHHH---------------------------------
T ss_pred             CCCCCCCEEEEEEEEECCC--EEEEEECCCCCCCEECHHHHHCCCCC---------------------------------
T ss_conf             0078998999999983398--79998067543230125564123444---------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCC
Q ss_conf             33444334454222233445543322223432112211121100001223444421331068885799984033323456
Q gi|254780751|r  114 IPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKG  193 (723)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~ilVQV~ke~~~~Kg  193 (723)
                                                                            ....+.+++||.|.|.|.+-....+-
T Consensus        62 ------------------------------------------------------~~~~~~~~vGq~v~~~V~~vd~~~~~   87 (119)
T 1wi5_A           62 ------------------------------------------------------KNKGAKLKVGQYLNCIVEKVKGNGGV   87 (119)
T ss_dssp             ------------------------------------------------------HSSSCCCCTTCEEEEEEEECCTTSCE
T ss_pred             ------------------------------------------------------CCCCCCCCCCCEEEEEEEEEECCCCE
T ss_conf             ------------------------------------------------------57432325899999999999899999


Q ss_pred             CCCCCCCCCCCCCEEE
Q ss_conf             4101233457652344
Q gi|254780751|r  194 AAVTTYLSLAGRYSVL  209 (723)
Q Consensus       194 a~lT~~isl~Gry~Vl  209 (723)
                      ..||..-+.......-
T Consensus        88 v~LS~k~~~~~~~~~~  103 (119)
T 1wi5_A           88 VSLSVGHSEVSTAIAT  103 (119)
T ss_dssp             EEEECCCCCSCCCCCC
T ss_pred             EEEEECHHHHHHHHHH
T ss_conf             9996147872034554