HHsearch results for GI: 254780751 and protein with PDBid: 2waq_E

>2waq_E DNA-directed RNA polymerase RPO7 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_E 2pmz_E 3hkz_E

Probab=96.01  E-value=0.017  Score=34.99  Aligned_cols=56  Identities=18%  Similarity=0.304  Sum_probs=44.6

Q ss_pred             CCEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCC
Q ss_conf             99899999607334604287879899783638823135327897713022213712102
Q gi|254780751|r   22 DNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQ   80 (723)
Q Consensus        22 ~g~l~e~~~e~~~~~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~   80 (723)
                      +......-++-.--+..+|.+|-|+|+.+-+  ..+||++|. -.||+|.+.+.+|||.
T Consensus        64 g~~~~~V~f~~~vf~P~~Gevi~g~V~~v~~--~Gifv~ig~-~~~~v~~~~~~~d~~~  119 (180)
T 2waq_E           64 GATYHEVEFDMITYVPVVQEVVEGEVLQVDN--YGIFVNLGP-MDGLVHISQITDDTLK  119 (180)
T ss_dssp             CSEEEEEEEEEEEECCCSSCCCCEEEEEECS--SEEEEBCSS-SBBCEESTTBCSSSSC
T ss_pred             CCEEEEEEEEEEEEECCCCCEEEEEEEEEEE--CEEEEEECC-CCCEEEHHHHCCCCCC
T ss_conf             7689999999999815589799999998860--219999548-6660868993777652